Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l06
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.6  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   8.0  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   8.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 276 RLQSFLHQHIRHYMKLHRYHH 338
           +LQSF+ QH  +  +  + HH
Sbjct: 87  QLQSFMQQHSLYLQQQQQQHH 107


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 319 NFTGIIILRSFFFIYFWNCLVP 384
           + T ++I+R     YF+N +VP
Sbjct: 220 DITFVVIIRRRTLYYFFNLIVP 241


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 450 NKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETT 283
           N   E++ + E  T +   PV+ ++   + +EEK   ND       +V   +  TT
Sbjct: 784 NSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNI-NDHCVTTEQSVVVTNVTTT 838


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 55  HCTQKIVALNHVIALNH 5
           HC   I ALN+VI   H
Sbjct: 85  HCAGVITALNNVIDFLH 101


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 55  HCTQKIVALNHVIALNH 5
           HC   I ALN+VI   H
Sbjct: 85  HCAGVITALNNVIDFLH 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,776
Number of Sequences: 438
Number of extensions: 3680
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)