Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l05
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 251 3e-67
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.48
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.48
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.48
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.48
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.48
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.48
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 30 1.1
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 29 2.6
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 5.9
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 5.9
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 5.9
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 251 bits (614), Expect = 3e-67
Identities = 117/179 (65%), Positives = 137/179 (76%)
Frame = -3
Query: 578 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 399
MGISRD WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 398 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 219
D+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 218 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRFAGLRXESP 42
L RKK AKL+E + AI+NKKRS T +KY RQ+ A V+ L EQF+TGR SP
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSP 179
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 410 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 410 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 410 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 410 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 410 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 410 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = -3
Query: 353 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 183
T+I+ + Y A E + K L+ K +I+ + + +S+ RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 182 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 84
++AI ++ + +K L + + +K E LEE+
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEE 368
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = -3
Query: 353 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 183
T+I+ + Y A E + K L+ K +I+ + + +S+ RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 182 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 84
++AI ++ + +K L + + +K E LEE+
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEE 368
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 463 ALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMH 323
++ E+TP + EI+ST VW V ++ K +S C +H
Sbjct: 524 SVGETTPVIIKEEIISTATKVWKKVDKTSGVSINKNKCLSTQRCDLH 570
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -3
Query: 212 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 87
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 307 TNSLLDALYTTSMIRVLRV 363
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 368 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 246
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,769,364
Number of Sequences: 27780
Number of extensions: 282416
Number of successful extensions: 932
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -