Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l02
(250 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 1.1
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 25 1.1
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 25 1.9
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 24 2.6
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 24 2.6
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 24 2.6
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 3.4
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 23 7.8
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 23 7.8
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 23 7.8
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 59 LARXRPSL-VNLHFPDSSGESILTPGL 136
L R + L VNL FP++ G S TPG+
Sbjct: 722 LTRNKSELNVNLTFPENLGASYRTPGV 748
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 25.4 bits (53), Expect = 1.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 53 SPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRI 226
+PL SLV++H GE + T L + S+ S P I TR S+R+
Sbjct: 718 NPLLHATKSLVSIHQQSQRGEMVST--LKQALSRPHTASTVVRSPSEINLTRQTSNRV 773
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 24.6 bits (51), Expect = 1.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 128 PGLVRTSSQHGPLSASESRPQTILRTRPPSSRI 226
PG + + +SAS S+P I++ RP + +
Sbjct: 510 PGQSSVRTSNNAMSASASKPSDIVQPRPEQAML 542
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 24.2 bits (50), Expect = 2.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 8 YPTTGPMRGLLAAGFSPLAR 67
YPTT P R ++ +G S + R
Sbjct: 785 YPTTNPFRYVIQSGISTVRR 804
Score = 23.8 bits (49), Expect = 3.4
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 23 PMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASE 178
P A FSP A S P S + TP V+TSS P+ ++E
Sbjct: 332 PSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPTVQTSSSAAPVDSAE 383
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 24.2 bits (50), Expect = 2.6
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +2
Query: 29 RGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTR 208
+ L A ++ L RPS+ N DSS R S P S + S P R+
Sbjct: 350 QSLRYAHYNYLPYSRPSVSNGFDDDSSSSDFAHFRYQRRSRPVSPCSTAPSSPTFSTRSF 409
Query: 209 PPSSRIT 229
P+ +T
Sbjct: 410 SPTPDVT 416
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.2 bits (50), Expect = 2.6
Identities = 19/81 (23%), Positives = 28/81 (34%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + + P S S +P TS + P S S S
Sbjct: 1584 SYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1643
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1644 TSPSYSPTSPSYSPTSPSYSP 1664
Score = 24.2 bits (50), Expect = 2.6
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1658 TSPSYSPTSPSYSPTSPSYSP 1678
Score = 23.8 bits (49), Expect = 3.4
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1664
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1665 TSPSYSPTSPSYSPTSPSYSP 1685
Score = 23.4 bits (48), Expect = 4.5
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1671
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1672 TSPSYSPTSPSYSPTSPSYSP 1692
Score = 23.4 bits (48), Expect = 4.5
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1679 TSPSYSPTSPSYSPTSPSYSP 1699
Score = 23.4 bits (48), Expect = 4.5
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1686 TSPSYSPTSPSYSPTSPSYSP 1706
Score = 23.4 bits (48), Expect = 4.5
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1693 TSPSYSPTSPSYSPTSPSYSP 1713
Score = 23.4 bits (48), Expect = 4.5
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1700 TSPSYSPTSPSYSPTSPSYSP 1720
Score = 23.4 bits (48), Expect = 4.5
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1707 TSPSYSPTSPSYSPTSPSYSP 1727
Score = 23.4 bits (48), Expect = 4.5
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1714 TSPSYSPTSPSYSPTSPSYSP 1734
Score = 23.4 bits (48), Expect = 4.5
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1721 TSPSYSPTSPSYSPTSPSYSP 1741
Score = 23.4 bits (48), Expect = 4.5
Identities = 19/81 (23%), Positives = 27/81 (33%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P + +SP + + P S S +P TS + P S S S
Sbjct: 1668 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1727
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T + P
Sbjct: 1728 TSPSYSPTSPSYSPTSPSYSP 1748
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 23.8 bits (49), Expect = 3.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 147 PVNMGHSAPVSPDLKPSSVPDLRVAELQETPR 242
PVN G ++PVS + ++ +L+ + + PR
Sbjct: 55 PVNTGPTSPVSINASNAAPSNLKASYIPANPR 86
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 22.6 bits (46), Expect = 7.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 118 HINTRLSADVQSTWATQRQ*VPTSNHPPYP 207
H++ S + S++ ++ VPT +HP P
Sbjct: 147 HLSEEESLHMASSFERTKKFVPTHSHPSAP 176
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 22.6 bits (46), Expect = 7.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 192 PSSVPDLRVAELQETP 239
P S PDLR L ETP
Sbjct: 115 PISEPDLRPQALNETP 130
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 22.6 bits (46), Expect = 7.8
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 11 PTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQ-HGPLSASES 181
PT P + S P ++ P +S + LTP LV +S+ + P S+S
Sbjct: 68 PTVRPGSSMSRTSASSFRYSSPQKSSIDTPITSSDQGLTPDLVGSSNALNKPTRESDS 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,005,005
Number of Sequences: 5004
Number of extensions: 16335
Number of successful extensions: 60
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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