Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l02
(250 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 34 0.018
06_03_0752 - 24171847-24174321 28 1.2
10_08_0351 - 17069974-17070232,17070470-17071751,17071908-170719... 27 1.6
07_03_0200 - 15016084-15016342,15016814-15016869,15016963-150179... 27 1.6
07_03_0020 + 12512841-12512879,12512964-12513009,12513830-125139... 27 2.1
01_01_0225 - 1911820-1912929,1913345-1913893,1914010-1914024 27 2.1
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 27 2.8
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 27 2.8
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858... 27 2.8
01_07_0120 + 41185884-41186127,41187228-41187310,41188596-411886... 27 2.8
12_01_0878 - 8420348-8420580,8420728-8420890 26 3.7
03_05_0421 + 24065725-24066052,24066811-24067040 26 3.7
02_05_0589 - 30176354-30176829,30176895-30177075 26 3.7
10_08_0254 + 16236689-16236793,16237760-16237808,16237988-162380... 26 4.8
04_03_1017 + 21747044-21748051 26 4.8
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 25 6.4
11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890... 25 6.4
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 25 6.4
06_03_0700 + 23650275-23650299,23650381-23652350 25 6.4
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 25 6.4
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 25 6.4
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 25 6.4
02_04_0197 - 20842893-20843492,20843562-20843912 25 6.4
07_01_1037 - 9026198-9026586,9026773-9026937,9027010-9027096,902... 25 8.5
05_06_0281 + 26912419-26913099 25 8.5
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 25 8.5
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 25 8.5
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 25 8.5
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 25 8.5
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352... 25 8.5
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 33.9 bits (74), Expect = 0.018
Identities = 25/66 (37%), Positives = 29/66 (43%)
Frame = +2
Query: 53 SPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRITG 232
SP R R + L PD E TP +RT PLSA SRP L R S+
Sbjct: 317 SPGPRPRAPVRPLDIPDFPNE---TPPNLRTKLPERPLSAGRSRPGMALGVRSTSNTEPS 373
Query: 233 DATLPV 250
A+ PV
Sbjct: 374 AASAPV 379
>06_03_0752 - 24171847-24174321
Length = 824
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 194 WFEVGTHWR*VAHVDWTSALSLVLIWTP 111
WF HW+ VA L L+L+W P
Sbjct: 638 WFADVCHWKNVATTALVHVLLLILVWYP 665
>10_08_0351 -
17069974-17070232,17070470-17071751,17071908-17071969,
17072109-17072181,17072399-17072466,17073023-17073207,
17073311-17073452,17073665-17073720,17074003-17074056,
17074679-17074782,17075012-17075112,17075717-17075790,
17076482-17076560,17076668-17076744,17076875-17076931,
17077058-17077168,17077254-17077334
Length = 954
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 221 GYSEVGYGGWFEVGTHWR*VAHVDWTSALSLVLIW 117
G+SE GYG WF+ W H + + IW
Sbjct: 862 GWSEEGYGYWFQTPEGWTIDGHYRSLIYMRPLAIW 896
>07_03_0200 -
15016084-15016342,15016814-15016869,15016963-15017960,
15018707-15018768,15019242-15019274,15019697-15019881,
15020033-15020133,15020783-15020795,15021216-15021319,
15021593-15021693,15022773-15022849,15022965-15023021,
15023158-15023268,15023803-15023859
Length = 737
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 221 GYSEVGYGGWFEVGTHWR*VAHVDWTSALSLVLIW 117
G+SE GYG WF+ W H + + IW
Sbjct: 645 GWSEEGYGYWFQTPEAWTIDGHYRSLIYMRPLAIW 679
>07_03_0020 +
12512841-12512879,12512964-12513009,12513830-12513954,
12514289-12514319,12514427-12514497,12514644-12514692,
12514780-12514880,12515594-12515722,12516076-12516120
Length = 211
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 250 DWERGVSCNSATRRSGTEDGLRS 182
+W +GV C+S T+R G ED RS
Sbjct: 58 NW-KGVRCDSHTKRRGKEDTCRS 79
>01_01_0225 - 1911820-1912929,1913345-1913893,1914010-1914024
Length = 557
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 220 ATRRSGTEDGLRSGLTGAEWPMLTGR 143
A R+G EDGLR + GA P +T R
Sbjct: 66 AAGRAGEEDGLRRAVAGALKPRVTYR 91
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 147 DVRTKPGVNMDSPEESG 97
D +T+P + MD+PEESG
Sbjct: 127 DDKTEPLITMDTPEESG 143
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 147 DVRTKPGVNMDSPEESG 97
D +T+P + MD+PEESG
Sbjct: 127 DDKTEPLITMDTPEESG 143
>07_03_0583 -
19684388-19684498,19685083-19685216,19685765-19685888,
19685982-19686251,19686961-19687155,19687236-19687328,
19687411-19687539,19687646-19689277
Length = 895
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 229 CNSATRRSGTEDGLRSGLTGAEWPMLTG 146
CN RR+G ++ + L G W TG
Sbjct: 414 CNHHKRRNGEQESQQDSLVGITWSQETG 441
>01_07_0120 +
41185884-41186127,41187228-41187310,41188596-41188647,
41188729-41188854,41188967-41189049,41189308-41189490,
41189901-41190237,41190607-41190750,41190854-41190939,
41191069-41191113
Length = 460
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +3
Query: 144 RPVNMGHSAP-VSPDLKPSSVP 206
+PVN G+S V+P+L P+SVP
Sbjct: 283 QPVNQGNSIRGVNPELSPNSVP 304
>12_01_0878 - 8420348-8420580,8420728-8420890
Length = 131
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 217 TRRSGTEDGLRSGLTGAEW 161
T R G DGL S TG EW
Sbjct: 45 TSREGLRDGLGSWTTGLEW 63
>03_05_0421 + 24065725-24066052,24066811-24067040
Length = 185
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 244 ERGVSCNSATRRSGTEDGLRSGLTGAE 164
+RGV C A RSGT G+R + E
Sbjct: 93 KRGVGCPPARARSGTGRGMRERIQKGE 119
>02_05_0589 - 30176354-30176829,30176895-30177075
Length = 218
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/57 (28%), Positives = 20/57 (35%)
Frame = +2
Query: 2 AAYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSA 172
A P GP R L P+ RP+ V F +S + S GP A
Sbjct: 132 AQAPAPGPTRAALTLRRPPIGAPRPAAVTAAFTPTSPSASRPSARTSPSPSPGPAQA 188
>10_08_0254 +
16236689-16236793,16237760-16237808,16237988-16238076,
16238178-16238234,16238684-16238746,16238828-16238893,
16239520-16239606,16239691-16239784,16240351-16240673,
16241022-16241048,16241065-16241145,16241445-16241476,
16242126-16242266,16242455-16242516,16243170-16243387
Length = 497
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 71 RPSLVNLHFP-DSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRITGDATLP 247
RP V+ + D+ GE TP R + + P + ++RP T+ + PP+ + A +P
Sbjct: 182 RPITVSYAYKKDTKGERHGTPA-ERLLAANNP-GSQKNRPHTMFASGPPTQGLANGAPVP 239
>04_03_1017 + 21747044-21748051
Length = 335
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 171 PVSPDLKPSSVPDLRVAELQETPRS 245
P SPD P+S P R A TP S
Sbjct: 58 PPSPDYTPASPPHRRAASPDYTPES 82
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 74 PSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASES 181
PS VN H SG++++ P + S G S +
Sbjct: 709 PSTVNCHISSDSGQNLVVPHALSPSDVIGSFMVSST 744
>11_03_0008 +
8901817-8902146,8903058-8903120,8903226-8903321,
8903924-8903971,8904558-8904629,8905373-8905431,
8905582-8905672,8905749-8905886
Length = 298
Score = 25.4 bits (53), Expect = 6.4
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSG-----ESILTPGLVRTSSQHGPLS 169
A PT GP AA S +R RP + +SS E L G V S L
Sbjct: 46 ARPTPGPPAPAAAAVSS--SRRRPGDSSAAAAESSAVQFSLEHDLGAGFVPAGSFSARLK 103
Query: 170 ASESRPQTILRTRPPSSRITGD 235
+S QT+ + R + +TGD
Sbjct: 104 SSAHGSQTLTKLRFTRNELTGD 125
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 25.4 bits (53), Expect = 6.4
Identities = 20/81 (24%), Positives = 28/81 (34%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESR 184
+Y T P+ + +SP + + P S S +P TS + P S S S
Sbjct: 1640 SYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Query: 185 PQTILRTRPPSSRITGDATLP 247
PS T A P
Sbjct: 1700 TSPSYSPTSPSYSPTSPAYSP 1720
>06_03_0700 + 23650275-23650299,23650381-23652350
Length = 664
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 23 PMRGLLAAGFSPLARXRPSLVNL 91
P RG+ AG S AR PSL++L
Sbjct: 194 PTRGVTDAGISAAARGCPSLLSL 216
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +2
Query: 5 AYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSAS 175
+Y T P + +SP + + + P S S +PG TS + P S S
Sbjct: 1751 SYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPS 1807
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 122 LTPGLVRTSSQHGPLSASESRPQTILRTRPP 214
LTP R+SS HG + P + R +PP
Sbjct: 48 LTPSPPRSSSTHGSARLTPPLPLPLPRRQPP 78
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 128 PGLVRTSSQHGPLSASESRPQTILRTRPPSSRITGD 235
P LV T H P + +++ T T+PPS +T D
Sbjct: 147 PSLV-THPPHSPSTPEKTQAATPSATQPPSPAVTED 181
>02_04_0197 - 20842893-20843492,20843562-20843912
Length = 316
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 7 VSHYWPDAGTFG 42
V HYWPDAG G
Sbjct: 189 VLHYWPDAGGAG 200
>07_01_1037 -
9026198-9026586,9026773-9026937,9027010-9027096,
9027173-9027245,9027947-9028012,9028096-9028194,
9028710-9028772,9028959-9029345
Length = 442
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 140 RTSSQHGPLSASESRPQTILRTRPPSSRITGDATLP 247
+TSS SRP R P S + GDA LP
Sbjct: 308 KTSSSSASSDEKLSRPLEGERVHPNSKKQRGDAVLP 343
>05_06_0281 + 26912419-26913099
Length = 226
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 247 WERGVSCNSATRRSGTEDGLRSGLTGAEWP 158
W GV + T+ +G +DG GL G WP
Sbjct: 123 WHPGVP--TQTQLAGGDDGGVGGLLGRPWP 150
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 220 ATRRSGTEDGLRSGLTGAEWP 158
A RRSG E G R G+E P
Sbjct: 59 APRRSGAEQGARRAAAGSEKP 79
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 238 GVSCNSATRRSGTEDGLRSGLTG 170
GV+C S+TRR G +G S G
Sbjct: 15 GVACGSSTRRVGVGNGNASAHAG 37
>03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = +2
Query: 80 LVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRITGDATLPV 250
++ L S ++I+ PG + GP+S R P+ R+ D T+ +
Sbjct: 867 IIILGVSSGSKKAIVEPGNHEVDIELGPISLRSGSSSVAPTVRKPNVRVVDDWTIRI 923
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 131 GLVRTSSQHGPLSASESRPQTILRTRPPSSRITGDATLP 247
G+VR + G + + S P+ + P+SR + D +LP
Sbjct: 2 GMVRKIGRAGREADASSSPELLPGPAQPASRTSQDGSLP 40
>01_06_1448 -
37434159-37434242,37434875-37434968,37435077-37435250,
37435536-37435627,37435947-37436056,37437274-37437349,
37437445-37437537,37437617-37437817
Length = 307
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Frame = +2
Query: 50 FSPLARXRPSLVNLHFPDSSGESILTPGLVR--------TSSQHGPLSASESRPQTIL 199
F +A + + NLHF + + PGLV+ T HG + A+ SRP++ L
Sbjct: 250 FPDIASVQLRMPNLHFIPVNLGNKENPGLVKFADDVYLPTDEPHGTIEATVSRPKSKL 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,521,445
Number of Sequences: 37544
Number of extensions: 136042
Number of successful extensions: 403
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -