Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l02
         (250 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative deoxynucl...    24   0.95 
AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate deo...    24   0.95 
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    23   1.7  
AF515521-1|AAM61888.1|  233|Anopheles gambiae glutathione S-tran...    22   2.9  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            22   2.9  
AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.         21   5.1  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    21   5.1  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    21   5.1  
AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative 5-oxoprol...    21   6.7  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            21   8.8  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           21   8.8  

>AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative
           deoxynucleoside kinase protein.
          Length = 245

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 101 DSSGESILTPGLVRTSSQHGPLSASESRPQT 193
           + S  SIL P L+  ++QH  L++   R +T
Sbjct: 213 ERSETSILKPILIENTNQHAILTSPAKRAKT 243


>AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate
           deoxyribonucleoside kinaseprotein.
          Length = 246

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 101 DSSGESILTPGLVRTSSQHGPLSASESRPQT 193
           + S  SIL P L+  ++QH  L++   R +T
Sbjct: 214 ERSETSILKPILIENTNQHAILTSPAKRAKT 244


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
            growth factor receptorprotein.
          Length = 1433

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 125  TPGLVRTSSQHGPLSASESRPQTILRTRPPSSRITGDATLPV 250
            TP L   S   GP SA +      L  + PSS  T    +P+
Sbjct: 1360 TPSLSSASGSIGPKSADQPGAAAGLHHQQPSSPPTQTIGIPL 1401


>AF515521-1|AAM61888.1|  233|Anopheles gambiae glutathione
           S-transferase u1 protein.
          Length = 233

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 214 RRSGTEDGLRSGLTGAEWPMLT 149
           +R+GT     SGLT A++P+++
Sbjct: 142 QRTGTRYAAGSGLTIADFPLVS 163


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 152  QHGPLSA-SESRPQTILRTRPPSS 220
            QH P S  ++ RP   L T PP+S
Sbjct: 1325 QHQPPSTQAQLRPSAPLNTSPPNS 1348


>AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 178 VPTSNHPPYP 207
           +PTS H PYP
Sbjct: 6   IPTSVHGPYP 15


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 NMGHSAPVSPDLKPSSVPDLR 215
           ++ HS P+S    PSS+   R
Sbjct: 522 SLNHSNPISSSAPPSSIVSRR 542


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 NMGHSAPVSPDLKPSSVPDLR 215
           ++ HS P+S    PSS+   R
Sbjct: 523 SLNHSNPISSSAPPSSIVSRR 543


>AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative 5-oxoprolinase
            protein.
          Length = 1344

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 147  PVNMGHSAPVSPDLKPSSVPD 209
            P+N G  AP+   + P S+ D
Sbjct: 1078 PLNQGCLAPIEVIIPPGSILD 1098


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 180 PDLKPSSVPDLRVAE 224
           P   PSSV DLR+ +
Sbjct: 482 PQKPPSSVQDLRILQ 496


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 159  GHSAPVSPDLKPSSVPDLRVAELQETPRS 245
            GH  PVS    P + P  +   L +  RS
Sbjct: 1226 GHDGPVSAGKPPQAPPKAKRTTLGQYIRS 1254


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,641
Number of Sequences: 2352
Number of extensions: 4569
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 12740367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)