Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l02
(250 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY122120-1|AAM52632.1| 602|Drosophila melanogaster GH19816p pro... 27 4.6
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P... 26 6.1
S80254-1|AAB35643.1| 508|Drosophila melanogaster crocodile prot... 26 8.0
BT024222-1|ABC86284.1| 599|Drosophila melanogaster LP17815p pro... 26 8.0
BT001793-1|AAN71548.1| 508|Drosophila melanogaster RH24787p pro... 26 8.0
BT001502-1|AAN71257.1| 599|Drosophila melanogaster LD34776p pro... 26 8.0
BT001483-1|AAN71238.1| 599|Drosophila melanogaster LD22379p pro... 26 8.0
AY061066-1|AAL28614.1| 599|Drosophila melanogaster LD03515p pro... 26 8.0
AE014297-858|AAF54325.2| 643|Drosophila melanogaster CG11984-PC... 26 8.0
AE014297-857|AAF54323.2| 643|Drosophila melanogaster CG11984-PB... 26 8.0
AE014297-856|AAF54324.2| 643|Drosophila melanogaster CG11984-PA... 26 8.0
AE014296-3541|AAF51727.1| 508|Drosophila melanogaster CG5069-PA... 26 8.0
>AY122120-1|AAM52632.1| 602|Drosophila melanogaster GH19816p
protein.
Length = 602
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 71 RPSLVNLHFPD-SSGESILTPGLVRTSSQHGPLSASESRPQTI 196
RP ++ HFP G +I TP LV +S PLS + RP +
Sbjct: 466 RPGVLESHFPVLGGGSAIETPALVAPASP-SPLS-NGKRPDVV 506
>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
protein.
Length = 23015
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 178 VPTSNHPPYPTSE*PNY 228
+P+ HP YPTS+ P Y
Sbjct: 19068 IPSVTHPEYPTSQVPVY 19084
>S80254-1|AAB35643.1| 508|Drosophila melanogaster crocodile
protein.
Length = 508
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 93 TSQTPPGSPY*HQA*CGRPVNMGHS 167
T +TPP P H G P + GH+
Sbjct: 353 TPETPPSEPVPHNGQQGTPTHPGHN 377
>BT024222-1|ABC86284.1| 599|Drosophila melanogaster LP17815p
protein.
Length = 599
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 86 NLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRI 226
N+HF SSG S L+P R S P++ S+ + R PP+S++
Sbjct: 176 NMHFSSSSGLSALSPS-GRESVD--PIAELLSQLSGVRRGGPPTSQL 219
>BT001793-1|AAN71548.1| 508|Drosophila melanogaster RH24787p
protein.
Length = 508
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 93 TSQTPPGSPY*HQA*CGRPVNMGHS 167
T +TPP P H G P + GH+
Sbjct: 353 TPETPPSEPVPHNGQQGTPTHPGHN 377
>BT001502-1|AAN71257.1| 599|Drosophila melanogaster LD34776p
protein.
Length = 599
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 86 NLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRI 226
N+HF SSG S L+P R S P++ S+ + R PP+S++
Sbjct: 176 NMHFSSSSGLSALSPS-GRESVD--PIAELLSQLSGVRRGGPPTSQL 219
>BT001483-1|AAN71238.1| 599|Drosophila melanogaster LD22379p
protein.
Length = 599
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 86 NLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRI 226
N+HF SSG S L+P R S P++ S+ + R PP+S++
Sbjct: 176 NMHFSSSSGLSALSPS-GRESVD--PIAELLSQLSGVRRGGPPTSQL 219
>AY061066-1|AAL28614.1| 599|Drosophila melanogaster LD03515p
protein.
Length = 599
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 86 NLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRI 226
N+HF SSG S L+P R S P++ S+ + R PP+S++
Sbjct: 176 NMHFSSSSGLSALSPS-GRESVD--PIAELLSQLSGVRRGGPPTSQL 219
>AE014297-858|AAF54325.2| 643|Drosophila melanogaster CG11984-PC,
isoform C protein.
Length = 643
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 86 NLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRI 226
N+HF SSG S L+P R S P++ S+ + R PP+S++
Sbjct: 220 NMHFSSSSGLSALSPS-GRESVD--PIAELLSQLSGVRRGGPPTSQL 263
>AE014297-857|AAF54323.2| 643|Drosophila melanogaster CG11984-PB,
isoform B protein.
Length = 643
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 86 NLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRI 226
N+HF SSG S L+P R S P++ S+ + R PP+S++
Sbjct: 220 NMHFSSSSGLSALSPS-GRESVD--PIAELLSQLSGVRRGGPPTSQL 263
>AE014297-856|AAF54324.2| 643|Drosophila melanogaster CG11984-PA,
isoform A protein.
Length = 643
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 86 NLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTILRTRPPSSRI 226
N+HF SSG S L+P R S P++ S+ + R PP+S++
Sbjct: 220 NMHFSSSSGLSALSPS-GRESVD--PIAELLSQLSGVRRGGPPTSQL 263
>AE014296-3541|AAF51727.1| 508|Drosophila melanogaster CG5069-PA
protein.
Length = 508
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 93 TSQTPPGSPY*HQA*CGRPVNMGHS 167
T +TPP P H G P + GH+
Sbjct: 353 TPETPPSEPVPHNGQQGTPTHPGHN 377
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,796,995
Number of Sequences: 53049
Number of extensions: 211835
Number of successful extensions: 1146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 24,988,368
effective HSP length: 62
effective length of database: 21,699,330
effective search space used: 433986600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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