Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l02
(250 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 2.3
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 2.3
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 2.3
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 2.3
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 27 2.3
AF125972-1|AAD14770.2| 349|Caenorhabditis elegans Hypothetical ... 27 2.3
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 26 3.1
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z66514-4|CAH10807.1| 626|Caenorhabditis elegans Hypothetical pr... 25 5.4
U37429-3|AAA79350.1| 585|Caenorhabditis elegans Hypothetical pr... 25 5.4
AL021481-7|CAA16331.3| 629|Caenorhabditis elegans Hypothetical ... 25 5.4
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 25 5.4
U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical pr... 25 7.1
U21323-11|AAA62556.1| 292|Caenorhabditis elegans Hypothetical p... 25 7.1
U21323-8|AAA62552.1| 294|Caenorhabditis elegans Hypothetical pr... 25 7.1
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 25 7.1
Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical pr... 25 9.4
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 53 SPLARXRPSLVNL-HFPDSSGESILTPGLVRT--SSQHGPLSASESRPQTILRTRPPSS 220
+P +P LVN H P +S S T G + T SSQ PL + SR ++ T P+S
Sbjct: 488 TPFPTSQPLLVNTTHLPGTSQPS--TSGGITTPRSSQPPPLMSPVSRHNSMSSTGRPAS 544
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 53 SPLARXRPSLVNL-HFPDSSGESILTPGLVRT--SSQHGPLSASESRPQTILRTRPPSS 220
+P +P LVN H P +S S T G + T SSQ PL + SR ++ T P+S
Sbjct: 779 TPFPTSQPLLVNTTHLPGTSQPS--TSGGITTPRSSQPPPLMSPVSRHNSMSSTGRPAS 835
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 53 SPLARXRPSLVNL-HFPDSSGESILTPGLVRT--SSQHGPLSASESRPQTILRTRPPSS 220
+P +P LVN H P +S S T G + T SSQ PL + SR ++ T P+S
Sbjct: 794 TPFPTSQPLLVNTTHLPGTSQPS--TSGGITTPRSSQPPPLMSPVSRHNSMSSTGRPAS 850
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 53 SPLARXRPSLVNL-HFPDSSGESILTPGLVRT--SSQHGPLSASESRPQTILRTRPPSS 220
+P +P LVN H P +S S T G + T SSQ PL + SR ++ T P+S
Sbjct: 794 TPFPTSQPLLVNTTHLPGTSQPS--TSGGITTPRSSQPPPLMSPVSRHNSMSSTGRPAS 850
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 53 SPLARXRPSLVNL-HFPDSSGESILTPGLVRT--SSQHGPLSASESRPQTILRTRPPSS 220
+P +P LVN H P +S S T G + T SSQ PL + SR ++ T P+S
Sbjct: 488 TPFPTSQPLLVNTTHLPGTSQPS--TSGGITTPRSSQPPPLMSPVSRHNSMSSTGRPAS 544
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 53 SPLARXRPSLVNL-HFPDSSGESILTPGLVRT--SSQHGPLSASESRPQTILRTRPPSS 220
+P +P LVN H P +S S T G + T SSQ PL + SR ++ T P+S
Sbjct: 779 TPFPTSQPLLVNTTHLPGTSQPS--TSGGITTPRSSQPPPLMSPVSRHNSMSSTGRPAS 835
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 53 SPLARXRPSLVNL-HFPDSSGESILTPGLVRT--SSQHGPLSASESRPQTILRTRPPSS 220
+P +P LVN H P +S S T G + T SSQ PL + SR ++ T P+S
Sbjct: 794 TPFPTSQPLLVNTTHLPGTSQPS--TSGGITTPRSSQPPPLMSPVSRHNSMSSTGRPAS 850
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 53 SPLARXRPSLVNL-HFPDSSGESILTPGLVRT--SSQHGPLSASESRPQTILRTRPPSS 220
+P +P LVN H P +S S T G + T SSQ PL + SR ++ T P+S
Sbjct: 794 TPFPTSQPLLVNTTHLPGTSQPS--TSGGITTPRSSQPPPLMSPVSRHNSMSSTGRPAS 850
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 143 TSSQHGPLSASESRPQTILRTRPPS 217
TSS+H P+ E R + + R+ PP+
Sbjct: 643 TSSRHSPVPRREDRAEFMARSTPPA 667
>AF125972-1|AAD14770.2| 349|Caenorhabditis elegans Hypothetical
protein H25P19.1 protein.
Length = 349
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 71 RPSLVNLHFPDSSGE-SILTPGLVRTSSQHGPLSASESRPQTILRTRP 211
RP +NL F + + TPG+ SS P S +S P+T T P
Sbjct: 270 RPPRINLKFRFTPSKLGTATPGISIISSPTPPKSPPKSTPRTSKSTPP 317
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 26.2 bits (55), Expect = 3.1
Identities = 20/71 (28%), Positives = 27/71 (38%)
Frame = +2
Query: 2 AAYPTTGPMRGLLAAGFSPLARXRPSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASES 181
A YP P L GF L S DS + +L+P ++ L S
Sbjct: 8428 ALYPDEHPHNVLRNIGFEELPSDSESRSEFDSLDSRSDGLLSPIPDDSTLSEEQLRRQRS 8487
Query: 182 RPQTILRTRPP 214
R + +LRT P
Sbjct: 8488 RWRRVLRTALP 8498
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 160 ATQRQ*VPTSNHPPYPTSE*PNYRRRHAPS 249
A +R+ P+ + P P E P RRR +PS
Sbjct: 387 APRRRRSPSKSRSPAPKREIPPARRRRSPS 416
>Z66514-4|CAH10807.1| 626|Caenorhabditis elegans Hypothetical
protein K01A11.5 protein.
Length = 626
Score = 25.4 bits (53), Expect = 5.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 19 WPDAGTFGCW 48
WP+A FGCW
Sbjct: 452 WPNADIFGCW 461
>U37429-3|AAA79350.1| 585|Caenorhabditis elegans Hypothetical
protein F09E5.10 protein.
Length = 585
Score = 25.4 bits (53), Expect = 5.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 19 WPDAGTFGCW 48
WP+A FGCW
Sbjct: 504 WPNADIFGCW 513
>AL021481-7|CAA16331.3| 629|Caenorhabditis elegans Hypothetical
protein Y43F4B.2 protein.
Length = 629
Score = 25.4 bits (53), Expect = 5.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 19 WPDAGTFGCW 48
WP+A FGCW
Sbjct: 435 WPNADIFGCW 444
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 25.4 bits (53), Expect = 5.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 19 WPDAGTFGCW 48
WP+A FGCW
Sbjct: 975 WPNADIFGCW 984
>U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical
protein F46C8.7 protein.
Length = 322
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -1
Query: 226 NSATRRSGTEDGLRSGLTGAEWPMLTGRPH*AWC*YGLPGGVWE 95
+S + E R+ + P + GR H YGL G WE
Sbjct: 136 DSVIKNFDVEKSKRTDTSSENDPRVIGRAHSILKPYGLAGNYWE 179
>U21323-11|AAA62556.1| 292|Caenorhabditis elegans Hypothetical
protein C45G9.4 protein.
Length = 292
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 140 RTSSQHGPLSASESRPQTILRTRPPSSRITGDATLP 247
R+ + P S S + P+T T +T ATLP
Sbjct: 134 RSEPLYQPRSVSSTTPRTSATTGTTEQMVTAPATLP 169
>U21323-8|AAA62552.1| 294|Caenorhabditis elegans Hypothetical
protein C45G9.9 protein.
Length = 294
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 140 RTSSQHGPLSASESRPQTILRTRPPSSRITGDATLP 247
R+ + P S S + P+T T +T ATLP
Sbjct: 136 RSEPLYQPRSVSSTTPRTSATTGTTEQMVTAPATLP 171
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 165 SAPVSPDLKPSSVPDLRVAELQET 236
SAP PD P +P+L +A + T
Sbjct: 130 SAPSRPDSSPPKLPELHLAYVNHT 153
>Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical
protein C07G2.2c protein.
Length = 509
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +2
Query: 74 PSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQT 193
PS FP G ++L P SS H PL AS P T
Sbjct: 265 PSTSGAPFP---GTTLLVPPKT-VSSYHSPLGASSQPPST 300
>Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical
protein C07G2.2b protein.
Length = 460
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +2
Query: 74 PSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQT 193
PS FP G ++L P SS H PL AS P T
Sbjct: 216 PSTSGAPFP---GTTLLVPPKT-VSSYHSPLGASSQPPST 251
>Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical
protein C07G2.2a protein.
Length = 457
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +2
Query: 74 PSLVNLHFPDSSGESILTPGLVRTSSQHGPLSASESRPQT 193
PS FP G ++L P SS H PL AS P T
Sbjct: 216 PSTSGAPFP---GTTLLVPPKT-VSSYHSPLGASSQPPST 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,700,309
Number of Sequences: 27780
Number of extensions: 98997
Number of successful extensions: 328
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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