Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l02
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   1.3  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    20   4.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   5.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    19   7.1  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    19   9.3  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    19   9.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 168 APVSPDLKPSSVPDLRVAELQETPR 242
           A VSP LK   +  LRVA+    P+
Sbjct: 559 AVVSPRLKVHGIRGLRVADASVQPQ 583


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDATL 244
           +RP  I + RPP  R+  +A L
Sbjct: 72  NRPVYIPQPRPPHPRLRREAEL 93



 Score = 20.2 bits (40), Expect = 4.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDATL 244
           +RP  I + RPP  R+  +A L
Sbjct: 128 NRPVYIPQPRPPHPRLRREAEL 149



 Score = 19.4 bits (38), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 100 NRPVYISQPRPPHPRLRREA 119



 Score = 19.4 bits (38), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 156 NRPVYISQPRPPHPRLRREA 175



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 44  NRPVYIPQPRPPHPRLRREA 63



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 184 NRPVYIPQPRPPHPRLRREA 203



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 212 NRPVYIPQPRPPHPRLRREA 231



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 240 NRPVYIPQPRPPHPRLRREA 259


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 83  VNLHFPDSSGESILTP 130
           + LH  D + ESIL P
Sbjct: 335 LELHTEDRAAESILEP 350


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 175 TGAEWPML 152
           TGAEWP L
Sbjct: 748 TGAEWPGL 755


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 164 VAHVDWTSALSLVLIW 117
           V ++ W  A +L+L+W
Sbjct: 169 VGNIRWELAGTLLLVW 184


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 45  NRPVYIPQPRPPHPRLRREA 64



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 73  NRPVYIPQPRPPHPRLRREA 92



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 101 NRPVYIPQPRPPHPRLRREA 120


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 16  NRPVYIPQPRPPHPRLRREA 35



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 44  NRPVYIPQPRPPHPRLRREA 63



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 72  NRPVYIPQPRPPHPRLRREA 91



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 100 NRPVYIPQPRPPHPRLRREA 119



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 128 NRPVYIPQPRPPHPRLRREA 147



 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 SRPQTILRTRPPSSRITGDA 238
           +RP  I + RPP  R+  +A
Sbjct: 156 NRPVYIPQPRPPHPRLRREA 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,426
Number of Sequences: 438
Number of extensions: 1455
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)