Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l01
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...   167   1e-42
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   2.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   3.7  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   4.9  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    26   4.9  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    25   8.6  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   8.6  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score =  167 bits (406), Expect = 1e-42
 Identities = 82/179 (45%), Positives = 112/179 (62%), Gaps = 12/179 (6%)
 Frame = -2

Query: 719 LQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINRSR 540
           L+ RTWL+HWSLF  FNH  G D + ++F Y P YLN IQT CP +LRYL  AV+ N++ 
Sbjct: 220 LRNRTWLLHWSLFPLFNHANGCDTLCDLFFYTP-YLNTIQTSCPWLLRYLTVAVVTNQNN 278

Query: 539 RNA------------LKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAV 396
            N             ++DLV++I QE Y Y DP+T FI  LY   DFE A+  L +C+ V
Sbjct: 279 ANQKPRNPRQSYQRRMRDLVRIISQENYEYSDPVTSFISALYTEVDFEKAQHCLRECEEV 338

Query: 395 LLTDFFLIACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRN 219
           L TDFFL++  + F+E AR ++ E +CRIH VIS+ +LA  L M  D A+  ++ L+ N
Sbjct: 339 LKTDFFLVSLCDHFLEGARKLLAEAYCRIHSVISVDVLANKLEM--DSAQ--LIQLVEN 393


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 383 FFLIACLEEFV-ENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLD 207
           FF I C   F+ +N R        R  ++  I +L + L  Q DE EC +++L +     
Sbjct: 487 FFNILCKIMFIIDNNRASREYPIAREKEISLIYLLRDYLFHQIDEDECPVIDLYQVLNRL 546

Query: 206 AKIDSKLGHVV 174
            K+D+ +   +
Sbjct: 547 GKLDAGINQAI 557


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/73 (27%), Positives = 38/73 (52%)
 Frame = -2

Query: 530 LKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFLIACLEEFV 351
           L  LVK++  E+YT R  I E + ++ ++   + A+ +++  ++V  T   L+  L E  
Sbjct: 309 LTQLVKLLDSESYTLRCAIIEVLANVVIDQIHDEAQNEMS--ESVPATVQSLMDLLSE-- 364

Query: 350 ENARLMIFETFCR 312
              RL+    +CR
Sbjct: 365 ---RLLDISPYCR 374


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 134 QLIVDMAKEVVHPSPRD-LTWNRSSR-PGAHYGLSSRSSIP 250
           ++I D+    +  S  D  T+++SSR PG H+G + RS  P
Sbjct: 547 RIIEDLPDSKLKYSLEDQATYDQSSRYPGRHFGKTGRSHFP 587


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 143 QLVERIDSLAVRSEALTSLVERKHKARNQ 57
           +L E I    VRSE L SL+ERK     Q
Sbjct: 105 RLYETIVDAGVRSELLLSLLERKELTNEQ 133


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 110 SLPVNRFSQLIVDMAKEVVHPSPRDLTWNRSSR 208
           ++P+ +   +++++AKEV+HP   D    R S+
Sbjct: 76  TMPIIQSFDVVINVAKEVLHPFRTDGRHYRDSK 108


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 612 ERHPDDVSPHPPLLGYCSNHKQVSQKCLEGPCES 511
           E H +D+SPH P     S H   ++K  E P  S
Sbjct: 407 EPHWNDLSPHDPNDPSSSLHSNNAEKAAEVPLRS 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,230
Number of Sequences: 5004
Number of extensions: 61196
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)