Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l01
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 256 2e-68
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 252 2e-67
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 201 4e-52
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 31 1.3
04_01_0012 - 210670-210759,210939-211008,211138-211235,211318-21... 30 1.7
06_03_0675 - 23428948-23431389 30 2.2
12_02_0982 - 25031778-25032122,25032388-25032534,25032693-250337... 28 9.0
04_04_0574 + 26338567-26338819,26338918-26338989,26339077-263391... 28 9.0
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 256 bits (626), Expect = 2e-68
Identities = 122/241 (50%), Positives = 174/241 (72%), Gaps = 11/241 (4%)
Frame = -2
Query: 737 ASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAV 558
+S + LQ R WL+HWS+F+FFNH GR+ II++F ++ YLNAIQT PH+LRYLATAV
Sbjct: 200 SSPLNQLQNRIWLMHWSIFIFFNHENGRNGIIDLF-FQDRYLNAIQTNAPHLLRYLATAV 258
Query: 557 IINRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFF 378
++N+ RRN LK+L+KVIQQE ++Y+DPITEF+E LYVN+DF+ A++KL +C+ V+L D F
Sbjct: 259 VVNKRRRNMLKELIKVIQQEQHSYKDPITEFLECLYVNYDFDGAQQKLIECEQVILNDPF 318
Query: 377 L-----------IACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVN 231
L + +EF+ENARL IFET+CRIH+ I IGML++ LNM DEAE WI+N
Sbjct: 319 LGKRIEEGNFVTVPLRDEFLENARLFIFETYCRIHRCIDIGMLSQKLNMSYDEAELWIMN 378
Query: 230 LIRNARLDAKIDSKLGHVVMGAQPLSPYQQLVERIDSLAVRSEALTSLVERKHKARNQDI 51
L+RN++LDAKIDS G ++M ++ ++Q++E + +L +R+ L + +A Q
Sbjct: 379 LVRNSKLDAKIDSVSGTLIMTTNHVNIHEQVIESLKNLNMRTFLLAKNIVEPAQAAQQAA 438
Query: 50 R 48
R
Sbjct: 439 R 439
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 252 bits (617), Expect = 2e-67
Identities = 119/241 (49%), Positives = 173/241 (71%), Gaps = 11/241 (4%)
Frame = -2
Query: 737 ASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAV 558
+S + LQ R WL+HWS+F+F+NH GR+ II++F ++ YLNAIQT PH+LRYLATAV
Sbjct: 176 SSPLNQLQNRIWLMHWSIFIFYNHENGRNGIIDLF-FQERYLNAIQTNAPHLLRYLATAV 234
Query: 557 IINRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFF 378
++N+ RRN LK+L+KVIQQE ++Y+DPITEF+E L+VN+DF+ A++KL +C+ V+L D F
Sbjct: 235 VVNKRRRNMLKELIKVIQQEQHSYKDPITEFLECLFVNYDFDGAQQKLIECEEVILNDPF 294
Query: 377 L-----------IACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVN 231
L + +EF+ENARL IFET+CRIH+ I IGML++ LNM+ DE E WI+N
Sbjct: 295 LGKRIEEGNSITVPLRDEFLENARLFIFETYCRIHRSIDIGMLSQKLNMRYDEGELWIMN 354
Query: 230 LIRNARLDAKIDSKLGHVVMGAQPLSPYQQLVERIDSLAVRSEALTSLVERKHKARNQDI 51
L+RN++LDAKIDS G ++M ++ ++Q +E + +L +R+ L + +A Q
Sbjct: 355 LVRNSKLDAKIDSVSGTLIMTTNHVNIHEQFIESLKNLNMRTSMLAKNIVEPAQAMQQAT 414
Query: 50 R 48
R
Sbjct: 415 R 415
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 201 bits (491), Expect = 4e-52
Identities = 97/182 (53%), Positives = 135/182 (74%), Gaps = 11/182 (6%)
Frame = -2
Query: 617 YLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFD 438
YLNAIQT PH+LRYLA A+++NR RRN LK+LVKVIQQE ++Y+DPITEF+E LYVN D
Sbjct: 230 YLNAIQTDAPHLLRYLAAAIVVNRRRRNMLKELVKVIQQEQHSYKDPITEFLECLYVNHD 289
Query: 437 FEAARRKLNQCQAVLLTDFFL-----------IACLEEFVENARLMIFETFCRIHQVISI 291
F+ A++KL +C+ V+L D FL + +EF+ENARL+IFE++CRIH+ I I
Sbjct: 290 FDGAQQKLIECEQVILNDPFLGKRIEEGNSITVPLRDEFLENARLLIFESYCRIHRCIHI 349
Query: 290 GMLAENLNMQPDEAECWIVNLIRNARLDAKIDSKLGHVVMGAQPLSPYQQLVERIDSLAV 111
GML+E L M +EAE WI+NL+ N++LDAKID+ G ++M A + +QQ +E + +L +
Sbjct: 350 GMLSEKLKMSYNEAELWIMNLVSNSKLDAKIDTASGTLIMTANHANIHQQFIESLKNLDM 409
Query: 110 RS 105
R+
Sbjct: 410 RT 411
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 98 ELRISLPVNRFSQLIVDMAKEVVHPSPRDLTWNRSS 205
E RIS NR QL+VD ++ P RD WN S
Sbjct: 140 EARISTAKNRLKQLLVDALSKIAIPMARD-RWNGMS 174
>04_01_0012 -
210670-210759,210939-211008,211138-211235,211318-211427,
211533-211683,212247-212391,212483-212749,212819-212957,
213036-213270
Length = 434
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -2
Query: 362 EEFVENARLM-IFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAKIDSKL 186
E+ + RLM + + R I + + L + DE E WIV I LD K+D +L
Sbjct: 317 EDCITKMRLMSLLDLSSRCAGEIPYHAIIDALKINDDEVEYWIVKAISCKILDCKVD-QL 375
Query: 185 GHVVM 171
V++
Sbjct: 376 NQVII 380
>06_03_0675 - 23428948-23431389
Length = 813
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 293 IGMLAENLNMQPDEAECWIVNLIRNARLDAKID 195
+ MLAEN+ +Q D WI N I ++RL+ + +
Sbjct: 740 VRMLAENVKLQEDSERSWITNFI-DSRLNGQFN 771
>12_02_0982 -
25031778-25032122,25032388-25032534,25032693-25033718,
25033758-25034227,25034393-25034471
Length = 688
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 329 RSSVEHFRQTLPNRRLRKSQSKVQLGID 412
R +++HFR T PN +R V L +D
Sbjct: 659 RRAMQHFRMTTPNHAVRDRHVSVLLSLD 686
>04_04_0574 +
26338567-26338819,26338918-26338989,26339077-26339135,
26339229-26339288,26339304-26339364,26339496-26339592,
26339684-26339750,26340123-26340311,26340404-26340639,
26340747-26340848,26340981-26341092
Length = 435
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 53 YLDCVLYVSFPLMKSELRISLPVN 124
YLDC + P + SELR LPV+
Sbjct: 184 YLDCAIRQVLPQISSELRRQLPVD 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,032,017
Number of Sequences: 37544
Number of extensions: 379848
Number of successful extensions: 963
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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