Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l01
         (744 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122062-1|AAM52574.1|  372|Drosophila melanogaster AT01736p pro...   399   e-111
U89162-1|AAC62307.1|  435|Drosophila melanogaster Int6 protein.       398   e-111
AF132551-1|AAD27850.1|  435|Drosophila melanogaster GM01233p pro...   398   e-111
AE014296-2801|AAF49412.1|  435|Drosophila melanogaster CG9677-PA...   398   e-111
AY075166-1|AAL68036.1|  773|Drosophila melanogaster AT05602p pro...    29   5.1  
AE014296-722|AAF47814.2|  773|Drosophila melanogaster CG14982-PB...    29   5.1  

>AY122062-1|AAM52574.1|  372|Drosophila melanogaster AT01736p
           protein.
          Length = 372

 Score =  399 bits (983), Expect = e-111
 Identities = 184/228 (80%), Positives = 210/228 (92%), Gaps = 1/228 (0%)
 Frame = -2

Query: 734 SNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVI 555
           S +QALQQRTWL+HWS+ VFFNH KGRDLIIEMFLYKPLYLNAIQTMCPHI+RYLATAV+
Sbjct: 137 STIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVV 196

Query: 554 INRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL 375
           INR+RRNALKDL+KVIQQE+YTYRDPITEF+E LYVNFDFEAAR KL++CQ V+L DFF+
Sbjct: 197 INRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFEAARLKLHECQTVILNDFFI 256

Query: 374 IACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAKID 195
           +ACL EFVE+ARLMIFETFCRIHQ I+I MLA+ LNM+P+EAECWIVNLIRNARL+AKID
Sbjct: 257 VACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAKID 316

Query: 194 SKLGHVVMGAQPLSPYQQLVERIDSLAVRSEALTSLVERKHKAR-NQD 54
           SKLGHVVMG QPLSPYQQLVE+IDSL++RSE L  L+ERK K + NQ+
Sbjct: 317 SKLGHVVMGTQPLSPYQQLVEKIDSLSMRSEHLAGLIERKSKQKQNQE 364


>U89162-1|AAC62307.1|  435|Drosophila melanogaster Int6 protein.
          Length = 435

 Score =  398 bits (979), Expect = e-111
 Identities = 183/228 (80%), Positives = 209/228 (91%), Gaps = 1/228 (0%)
 Frame = -2

Query: 734 SNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVI 555
           S +QALQQRTWL+HWS+ VFFNH KGRDLIIEMFLYKPLYLNAIQTMCPHI+RYLATAV+
Sbjct: 200 STIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVV 259

Query: 554 INRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL 375
           INR+RRNALKDL+KVIQQE+YTYRDPITEF+E LYVNFDFE AR KL++CQ V+L DFF+
Sbjct: 260 INRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFEGARLKLHECQTVILNDFFI 319

Query: 374 IACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAKID 195
           +ACL EFVE+ARLMIFETFCRIHQ I+I MLA+ LNM+P+EAECWIVNLIRNARL+AKID
Sbjct: 320 VACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAKID 379

Query: 194 SKLGHVVMGAQPLSPYQQLVERIDSLAVRSEALTSLVERKHKAR-NQD 54
           SKLGHVVMG QPLSPYQQLVE+IDSL++RSE L  L+ERK K + NQ+
Sbjct: 380 SKLGHVVMGTQPLSPYQQLVEKIDSLSMRSEHLAGLIERKSKQKQNQE 427


>AF132551-1|AAD27850.1|  435|Drosophila melanogaster GM01233p
           protein.
          Length = 435

 Score =  398 bits (979), Expect = e-111
 Identities = 183/228 (80%), Positives = 209/228 (91%), Gaps = 1/228 (0%)
 Frame = -2

Query: 734 SNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVI 555
           S +QALQQRTWL+HWS+ VFFNH KGRDLIIEMFLYKPLYLNAIQTMCPHI+RYLATAV+
Sbjct: 200 STIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVV 259

Query: 554 INRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL 375
           INR+RRNALKDL+KVIQQE+YTYRDPITEF+E LYVNFDFE AR KL++CQ V+L DFF+
Sbjct: 260 INRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFEGARLKLHECQTVILNDFFI 319

Query: 374 IACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAKID 195
           +ACL EFVE+ARLMIFETFCRIHQ I+I MLA+ LNM+P+EAECWIVNLIRNARL+AKID
Sbjct: 320 VACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAKID 379

Query: 194 SKLGHVVMGAQPLSPYQQLVERIDSLAVRSEALTSLVERKHKAR-NQD 54
           SKLGHVVMG QPLSPYQQLVE+IDSL++RSE L  L+ERK K + NQ+
Sbjct: 380 SKLGHVVMGTQPLSPYQQLVEKIDSLSMRSEHLAGLIERKSKQKQNQE 427


>AE014296-2801|AAF49412.1|  435|Drosophila melanogaster CG9677-PA
           protein.
          Length = 435

 Score =  398 bits (979), Expect = e-111
 Identities = 183/228 (80%), Positives = 209/228 (91%), Gaps = 1/228 (0%)
 Frame = -2

Query: 734 SNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVI 555
           S +QALQQRTWL+HWS+ VFFNH KGRDLIIEMFLYKPLYLNAIQTMCPHI+RYLATAV+
Sbjct: 200 STIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVV 259

Query: 554 INRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL 375
           INR+RRNALKDL+KVIQQE+YTYRDPITEF+E LYVNFDFE AR KL++CQ V+L DFF+
Sbjct: 260 INRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFEGARLKLHECQTVILNDFFI 319

Query: 374 IACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAKID 195
           +ACL EFVE+ARLMIFETFCRIHQ I+I MLA+ LNM+P+EAECWIVNLIRNARL+AKID
Sbjct: 320 VACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAKID 379

Query: 194 SKLGHVVMGAQPLSPYQQLVERIDSLAVRSEALTSLVERKHKAR-NQD 54
           SKLGHVVMG QPLSPYQQLVE+IDSL++RSE L  L+ERK K + NQ+
Sbjct: 380 SKLGHVVMGTQPLSPYQQLVEKIDSLSMRSEHLAGLIERKSKQKQNQE 427


>AY075166-1|AAL68036.1|  773|Drosophila melanogaster AT05602p
           protein.
          Length = 773

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 161 VVH--PSPRDLTWNRSSRPGAHYGLSSRSSIP 250
           VVH   SPR  + N SS PG H+G +  S+ P
Sbjct: 4   VVHGCSSPRQRSCNGSSSPGGHHGSTPSSAYP 35


>AE014296-722|AAF47814.2|  773|Drosophila melanogaster CG14982-PB
           protein.
          Length = 773

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 161 VVH--PSPRDLTWNRSSRPGAHYGLSSRSSIP 250
           VVH   SPR  + N SS PG H+G +  S+ P
Sbjct: 4   VVHGCSSPRQRSCNGSSSPGGHHGSTPSSAYP 35


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,118,020
Number of Sequences: 53049
Number of extensions: 659513
Number of successful extensions: 1766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)