Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l01
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...   248   3e-66
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    31   0.65 
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        29   3.5  
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score =  248 bits (607), Expect = 3e-66
 Identities = 117/218 (53%), Positives = 164/218 (75%), Gaps = 2/218 (0%)
 Frame = -2

Query: 725 QALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINR 546
           + + QR WL+HW+LFV++N+ KGRD IIEMFL +  YLNAIQ + PH+LRYLA AV+ ++
Sbjct: 206 ELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLAPHLLRYLAVAVVTSK 265

Query: 545 SR-RNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFLIA 369
           SR +N+LKDLVKVI  E ++Y+DP+T+F+  LY+ +DF+ A+  L +C+ VL  DFFL A
Sbjct: 266 SRQKNSLKDLVKVIDIERHSYKDPVTDFLTCLYIKYDFDEAQEMLQKCEEVLSNDFFLTA 325

Query: 368 CLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLD-AKIDS 192
            L +F E+ARL+IFE FCRIHQ I+I MLA  LNM  +EAE WIV+LIR  R++ AKIDS
Sbjct: 326 VLGDFRESARLLIFEMFCRIHQCITIEMLARRLNMSQEEAERWIVDLIRTYRIEGAKIDS 385

Query: 191 KLGHVVMGAQPLSPYQQLVERIDSLAVRSEALTSLVER 78
           KLG VVMG + +S ++Q++E    L +R++ +   +E+
Sbjct: 386 KLGQVVMGVKSVSIHEQVMENTKRLTLRAQQIALQLEK 423


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -2

Query: 632 LYKPLYLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKVIQQEAYTYRDPITEFIEHL 453
           +YK  YL  +   CPHI+R +A A  ++  +   L  L++    E Y   D    F + L
Sbjct: 116 VYKKEYLADLMD-CPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDIL 174

Query: 452 YV 447
           ++
Sbjct: 175 FI 176


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 593 CPHILRYLATAVIINRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYV 447
           CPHI+R +A A  ++  +   L  L++    E Y   D    F + L++
Sbjct: 3   CPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFI 51


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -2

Query: 554 INRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL 375
           +  S +  +++    ++    T+   I E  +    NF+ E ARR+   C A+      +
Sbjct: 539 MKNSNQQVIRNHANAVESLQKTHETQIAEKNKEFERNFEEERARREAEVC-AMNNRHQKV 597

Query: 374 IACLEEFVENA 342
           +ACL+E +  A
Sbjct: 598 VACLDEKISEA 608


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -2

Query: 554 INRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL 375
           +  S +  +++    ++    T+   I E  +    NF+ E ARR+   C A+      +
Sbjct: 607 MKNSNQQVIRNHANAVESLQKTHETQIAEKNKEFERNFEEERARREAEVC-AMNNRHQKV 665

Query: 374 IACLEEFVENA 342
           +ACL+E +  A
Sbjct: 666 VACLDEKISEA 676


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,471,821
Number of Sequences: 27780
Number of extensions: 340706
Number of successful extensions: 1031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)