Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13k23
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz... 46 4e-06
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 31 0.13
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 31 0.22
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 30 0.39
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 29 0.51
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 29 0.68
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.68
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.89
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.2
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 28 1.6
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 28 1.6
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 2.1
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 2.1
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 27 2.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.6
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 26 4.8
SPAC664.08c |||traub transciption factor family protein |Schizos... 26 6.3
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 8.3
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.3
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 25 8.3
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 8.3
>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/68 (35%), Positives = 41/68 (60%)
Frame = -2
Query: 717 YSNLSLTIGDVRTKKKDWEEKLQKCRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVS 538
YSNL L++G+ K+ + + CR++ L + I + HRL +V+++ L GI+S
Sbjct: 246 YSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILS 305
Query: 537 LSDILVYL 514
L+DIL Y+
Sbjct: 306 LADILNYI 313
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 31.5 bits (68), Expect = 0.13
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = -2
Query: 453 EENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTA-----ENDDTGEVSCNVECVDA 289
++ K+ N+ S E LGN+++ +NE +++ +N D V +
Sbjct: 321 KQAKLETKKSGNKDHATSSEKLSLGNESIHSINETRSSSIEEPDNADNKIVEEEPMLLPV 380
Query: 288 ETTADG-NVEKSLEYDICNDCDDAE 217
TTA G NV ++++YD + +D E
Sbjct: 381 PTTAQGQNVLEAVQYDGLDSLEDME 405
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 30.7 bits (66), Expect = 0.22
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 195 LREYLYSFLHHHNHYKYHIRGFFQRFRLQSFLHQHI-RHYMKLHRY 329
L+E Y LH+HN H + FFQ++ + FL I H + RY
Sbjct: 344 LKEIAYIMLHYHNKPLEH-KAFFQKYSSKRFLKASIFVHQLVRQRY 388
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 587 WLSVLTITSKASYKVILERHFCNFSSQSFFLVLTS 691
WL+VL +T+ ++ +LER +FS Q FL L+S
Sbjct: 674 WLNVLPLTAITTFSSMLER--LDFSDQILFLALSS 706
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 495 EKKISSLQEIFRPLEENKVPESSKENESDTI 403
EKKI SL+E+ P E ++ E+ ENE D +
Sbjct: 250 EKKIGSLKELAVPQESIELLEAEYENEMDRV 280
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 29.1 bits (62), Expect = 0.68
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = -2
Query: 627 LYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRIIPSEKKISSLQEIFRPLEE 448
L + LE ++ T LL+NKD++ + + LS + L++++PS + P E
Sbjct: 137 LKKGLECVIETPPR--LLMNKDEISLNLQRLSHMETILSKLMPS-------MSLDLPSLE 187
Query: 447 NKVPESSKENES--DTISIEVPVLGNQAVPEVNEEKTAEND 331
K+ E S+ ++ D + ++ LG+ +NE +T D
Sbjct: 188 AKIAELSESLQTYPDKVLTDIE-LGSYQQVTLNETQTYYED 227
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 540 SLSDILVYLNRIIPSEKKISSLQEIFRPLEENKVPESSKENESDTIS 400
+L D +V + SEK L E FRP+ + +V E KENE ++
Sbjct: 563 TLQDNIVSGRGLSLSEKSYRILPEKFRPVCDKRVIEIPKENEEVVVA 609
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 28.7 bits (61), Expect = 0.89
Identities = 24/96 (25%), Positives = 41/96 (42%)
Frame = -2
Query: 606 IVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRIIPSEKKISSLQEIFRPLEENKVPESS 427
I+R+ + ++ + KD L I L+ +P ++ S L + L + V +
Sbjct: 160 ILRSAADLIIELLKDSSLDEQGRKKQIEEVLSTELPQDR-FSQLVNLGNRLTDYTVEQEE 218
Query: 426 KENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGE 319
+ NE VPVL N+A E + E D+ E
Sbjct: 219 ELNEEGVNESGVPVLFNEADEEEEAVEAMEEDEVAE 254
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 112 AVPPITISLEYIFSTLDMNIL 174
AVPP TI+L +IF LD++ L
Sbjct: 152 AVPPYTITLSHIFGKLDVDSL 172
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.9 bits (59), Expect = 1.6
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Frame = -2
Query: 726 EKLYSNLSLTIGDVRTKKKDWEEKLQKCRSSI-TLYEALEVIVRTESHRLLLVNKD---D 559
E + S+L + + T+ ++ + +L + ++ I TL E + E + +NK+ +
Sbjct: 798 ENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAA-DELSSMESINKNQANE 856
Query: 558 MLIGIVSLSDI---LVYLNRIIPSE-KKISSLQEIFRPLEENKVPESSKENESDTISIEV 391
+ + S++ + + N++ +KISSL+ + LE S+ E T+ E
Sbjct: 857 LKLAKQKCSNLQEKINFGNKLAKEHTEKISSLE---KDLEAATKTASTLSKELKTVKSEN 913
Query: 390 PVLGNQAVPEVNEEKTAENDDTGEVS-CNVECVDAETTADGNVEKSLEYDICNDCDDAEM 214
L + + + N+EK+ N+ EVS E + D +E+ L+ DI +A +
Sbjct: 914 DSLKSVSNDDQNKEKSVNNEKFKEVSQALAEANEKLNARDEEIER-LKVDIIG-LQNASL 971
Query: 213 NIDT 202
N+ +
Sbjct: 972 NMQS 975
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/106 (21%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Frame = -2
Query: 660 EKLQKCRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRIIPSEKKIS 481
E++ +CR S+ +EVI + S + L D ++ LS V + +++ ++
Sbjct: 197 EQIIECRDSLAQEYLVEVICQAFSDNMHLQTLDTYFGTVIKLSP-SVNVTQLV-----VA 250
Query: 480 SLQEIFRPLEENKVPESSKENESDTISIEV-PVLGNQAVPEVNEEK 346
L + ++ +SS E+ES+T++ ++ + N+ V + +E++
Sbjct: 251 MLNRLTDYVQREYESDSSNEDESETVTEKLGDIKINEEVQQKDEQE 296
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 501 PSEKKISSLQEIFRPLEENKVPESSKE--NESDTISIEVPVLGN 376
PSE + + LQ + P+ N VP+ ++ ES+ + + P N
Sbjct: 185 PSENRKNRLQNVLSPIASNNVPDFNQNYPTESNPMFLSTPRFQN 228
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 537 LSDILVYLN-RIIPSEKKISSLQEIFRPLEENKVPESSKENESDTI 403
+ ++ VY + R+ K+SSL+E + LE+ +P+ + N+S I
Sbjct: 686 MEEVKVYNDSRVEALLAKVSSLEETLKILEQKSLPKFTPHNQSPRI 731
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Frame = -2
Query: 501 PSEKKISSLQEIFRPLEENKVPESSKENESD-----TISIEVPV-----LGNQAVPEVNE 352
P + + S+ Q E + P S +EN D T +IE+PV L NQ + +
Sbjct: 34 PRQSEESAGQSTGTESEVIQTPTSVEENNEDENSMSTTTIEIPVVKRRNLRNQKKKKKTD 93
Query: 351 EKTAENDDT 325
E+ +N+DT
Sbjct: 94 EEAEDNEDT 102
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 3.6
Identities = 22/91 (24%), Positives = 38/91 (41%)
Frame = -2
Query: 726 EKLYSNLSLTIGDVRTKKKDWEEKLQKCRSSITLYEALEVIVRTESHRLLLVNKDDMLIG 547
EK YS L LT+ +R D + + I+ + + ++K + +
Sbjct: 174 EKPYS-LGLTLYSLRVTSTDASFTEYLLSTDPIPSSCIHKIITVDYFSIYWISKCE-ISK 231
Query: 546 IVSLSDILVYLNRIIPSEKKISSLQEIFRPL 454
+ DI YL +IPS +K + I +PL
Sbjct: 232 CTTTEDIFSYLKNLIPSAEKSPAYNYILKPL 262
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 684 RTKKKDWEEKLQKCRSSI 631
+T+KK W+EKL K RS +
Sbjct: 52 QTEKKCWKEKLMKIRSEL 69
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/101 (18%), Positives = 44/101 (43%)
Frame = -2
Query: 552 IGIVSLSDILVYLNRIIPSEKKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQ 373
+G VSL D L + P E+ +L++ F E++ E+ + + L ++
Sbjct: 1 MGKVSLKDELAGMLNPQPQERDPEALEDAFSDREDSSEEENDTLGREHYVDVSESKLRSK 60
Query: 372 AVPEVNEEKTAENDDTGEVSCNVECVDAETTADGNVEKSLE 250
P+++ + E+ N +++++++ E S E
Sbjct: 61 QAPQLDPKFKGRKTSRQEL-LNSGSLNSQSSSPSEEEDSEE 100
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 501 PSEKKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAE-NDDT 325
P IS+ QEI +P + + E + S+E + + ++ NE +T E N D+
Sbjct: 385 PDSTNISNEQEIVQPQPTHTTNVALVEEINRPDSVESAITASSSIDTGNENETQEVNSDS 444
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 219 LHHHNHYKYHIRGFFQRFRLQSFLHQHIRHY 311
L +H+H+ + I FF F F H R +
Sbjct: 61 LPYHHHHTFTIEAFFYWFFFFFFFFSHCRRF 91
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = -2
Query: 351 EKTAENDDTGEVSCNVECVDAETTADGNVEKSLEYDICNDCDDAEMNIDTP 199
+ E DD GE + V + T D N + L Y I ++ + P
Sbjct: 506 DSAVEKDDDGEEATRVPLLIEVTFIDSNSTEGLPYQILSNATSIPLKQQPP 556
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/52 (23%), Positives = 30/52 (57%)
Frame = -2
Query: 639 SSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRIIPSEKKI 484
+S+ + ALE ++ + L +V++ D +IG++SL + + + E+++
Sbjct: 337 ASLRVSTALERMIEGKFSNLPVVDESDAIIGMLSLFHLATAIEQTPEEEEEV 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,532
Number of Sequences: 5004
Number of extensions: 51627
Number of successful extensions: 214
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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