Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13k23
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0443 + 3204142-3204674,3205446-3206178 39 0.005
02_05_1232 + 35110891-35111154,35111272-35111448,35111557-351116... 36 0.043
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 33 0.23
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 32 0.40
03_01_0380 + 2955102-2955357,2955468-2956189 32 0.40
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 31 0.70
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572... 25 1.5
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 1.6
08_01_0403 + 3584816-3584941,3585801-3585935,3586020-3586067,358... 30 2.2
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 30 2.2
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376... 29 2.8
09_01_0080 - 1168032-1168046,1168374-1168431,1168516-1168631,116... 29 5.0
01_05_0510 - 22816607-22816916,22817005-22817177,22817341-228176... 29 5.0
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 28 6.6
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 28 6.6
06_03_1277 + 28918140-28918279,28919552-28919761,28920179-289203... 28 8.7
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000... 28 8.7
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 28 8.7
01_06_0785 - 31985455-31988463 28 8.7
>02_01_0443 + 3204142-3204674,3205446-3206178
Length = 421
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = -2
Query: 645 CRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDIL 523
C TL EA+E V HRL +V+++ +L G+VSL+D+L
Sbjct: 362 CSPESTLGEAIEKAVAHHVHRLWVVDEEGLLAGVVSLTDVL 402
>02_05_1232 +
35110891-35111154,35111272-35111448,35111557-35111626,
35111717-35111788,35111921-35111976
Length = 212
Score = 35.5 bits (78), Expect = 0.043
Identities = 16/46 (34%), Positives = 31/46 (67%)
Frame = -2
Query: 639 SSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRII 502
S T+ +A ++++ + HRL +VN+D +IGIV+ +D+L L ++
Sbjct: 165 SDKTVMDAAALMLKKKIHRLPIVNQDRQVIGIVTRADVLRELEALL 210
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 33.1 bits (72), Expect = 0.23
Identities = 22/91 (24%), Positives = 42/91 (46%)
Frame = -2
Query: 495 EKKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEV 316
EK++ Q+ R L K E SK +++T + + + + ++ +E T+ ND
Sbjct: 278 EKQLILAQDKMRLLALEKQIEVSKAKDTETEKVML----EKELEKIQKESTSLNDQIHSS 333
Query: 315 SCNVECVDAETTADGNVEKSLEYDICNDCDD 223
S + + E N ++ LE D+C D+
Sbjct: 334 SSMIIRLQDEIITMKNAQRRLEEDVCRHVDE 364
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 32.3 bits (70), Expect = 0.40
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 354 EEKTAENDDTGEVSCNVECVDAETTADGNVEKSLEYDICNDCDDAEMNIDTP 199
+E E+DD +VE + T D + E S Y I D DD MN P
Sbjct: 337 DEGIGEDDDDDTAQSSVEIGSLKITGDSDTEPSYVY-ITKDIDDEAMNTSQP 387
>03_01_0380 + 2955102-2955357,2955468-2956189
Length = 325
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/98 (21%), Positives = 43/98 (43%)
Frame = -2
Query: 492 KKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVS 313
KK+ S + L++ ++ S + + + +S E+P A+ E++ + + +S
Sbjct: 206 KKMPSSSPVDSNLKKVRIALDSDDEDENILSYELP-----AISEISSVEIGNVSNVNSLS 260
Query: 312 CNVECVDAETTADGNVEKSLEYDICNDCDDAEMNIDTP 199
+ + A + K +E IC D D +MN P
Sbjct: 261 AAADYLSAPLNVLTSAAKEVEEPICIDAIDVDMNPVNP 298
>11_01_0450 -
3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 390 PVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETTADGNVEKS 256
P+L N + ++++E T N DTG + +DA T++ N +S
Sbjct: 453 PILENPFMQDISDENTNSNKDTGHEGLTLLNLDATLTSNENFAQS 497
>03_02_0120 -
5728572-5728712,5728812-5728916,5729178-5729441,
5729809-5729958,5730070-5730150,5730481-5730597,
5730679-5730831,5731426-5731569,5731773-5731802,
5732070-5732430,5732682-5732849,5733371-5733600,
5734088-5734194,5734275-5734623
Length = 799
Score = 25.0 bits (52), Expect(2) = 1.5
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -2
Query: 540 SLSDILVYLNRIIPSEKKI---SSLQEIFRPLEENKVPESSKENESDTISI 397
S+ + ++ L I+PSEK+I SL E F E + +S ++ D SI
Sbjct: 577 SIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGEVTSLADKEDISSI 627
Score = 23.8 bits (49), Expect(2) = 1.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 708 LSLTIGDVRTKKKDWEEKLQKCRSSITLYEAL 613
LSL IGD+ K+ L++C + ++ EA+
Sbjct: 551 LSLAIGDIEKAKETLTGFLEQCDLTKSIIEAI 582
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +3
Query: 210 YSFLHHHNHYKYHIRGFFQRFRLQSFLHQHIRHYMKLHRYHHSPQ 344
Y HH Y++ R FQ R Q QH H H+ + Q
Sbjct: 154 YQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQ 198
>08_01_0403 +
3584816-3584941,3585801-3585935,3586020-3586067,
3587042-3587166,3587248-3587347
Length = 177
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = -2
Query: 702 LTIGDVRTKKKDWEEKL--QKCRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSD 529
+ + + +K +EKL K S+++L+E EV R+E H L +D + LSD
Sbjct: 56 MNLASILLVQKSLDEKLAQHKLLSNVSLFEDKEVSQRSEEHSKQLTVQDIQMKKDELLSD 115
Query: 528 ILVYLNRIIPSEKKISSLQEIFRPLEENKVPESSKENESDTISI 397
I R+ E + SLQ+ ++N + + D ++
Sbjct: 116 I----RRVEILEGTLRSLQKTRFQSQDNNICAQRLKGSEDGFTL 155
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 198 REYLYSFLHHHNHYKYHIRGFFQRFRLQ 281
R LY ++H+HN YK H Q +L+
Sbjct: 389 RRNLYRYMHYHNRYKAHTDSLKQEAKLK 416
>05_06_0271 +
26836396-26836610,26836793-26836872,26837573-26837641,
26837694-26837985,26838303-26838399,26838478-26838744,
26838832-26838909,26839019-26839120,26839251-26839300,
26839383-26839482,26839645-26839743,26839840-26839968,
26840319-26840427,26840652-26841055,26841140-26841280,
26841373-26841393
Length = 750
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 542 TIPINISSLFTNNSRWLSVLTITSKASYKVILERHFCNFSSQS 670
++PI L+T WL+VL ++ A + + R FSSQS
Sbjct: 569 SLPITFDGLWTQVITWLTVLIVSLFAMVRSVPSRMAKRFSSQS 611
>09_01_0080 -
1168032-1168046,1168374-1168431,1168516-1168631,
1169310-1169368,1169832-1169880,1170314-1170378,
1170477-1170564,1171212-1171277
Length = 171
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = -2
Query: 717 YSNLSLTIGDVRTKKKDWEEKLQKCRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVS 538
++N T+GD TK+ + L + ++ EALE +V+ + +V+ L+G+VS
Sbjct: 23 HNNGVYTVGDFMTKRPN----LHVVTPATSVDEALETLVQHKISGFPVVDDTGKLVGVVS 78
Query: 537 LSDIL 523
D+L
Sbjct: 79 DYDLL 83
>01_05_0510 -
22816607-22816916,22817005-22817177,22817341-22817607,
22817951-22818393,22818474-22818635,22820991-22821414,
22823177-22823227
Length = 609
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -2
Query: 645 CRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDIL 523
C +L ++ I +HR+ +V+ D ++G+V+L D++
Sbjct: 536 CSPDASLGSVIDSIASRITHRIYVVDGDFEVVGVVTLRDVI 576
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 222 HHHNHYKYHIRGFFQRFRLQ 281
HHH+H +H +G FQ F LQ
Sbjct: 5 HHHHHQDHH-QGHFQAFSLQ 23
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 513 NRIIPSEKKISSLQEIFRPLE--ENKVPESSKENESDT 406
N +PSE++ S + +P+E E K P KE DT
Sbjct: 94 NNTVPSEEEKFSENTVEKPVESSEEKAPPKEKEESKDT 131
>06_03_1277 +
28918140-28918279,28919552-28919761,28920179-28920374,
28920459-28920853,28921024-28921119,28921330-28921402,
28921650-28921935,28923824-28923946,28924123-28924404,
28924513-28924928
Length = 738
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 192 GLREYLYSFLHHHNHYKYHIRGFFQRFRLQSFLHQHIRHYMKLHRY-HHSPQF 347
G E LYS+ H N + H+ F ++ +H+ MK+ + H+PQF
Sbjct: 159 GTYEKLYSYHHLINGFAVHMSPLQAEFLRKAPGVKHVERDMKIQKLTTHTPQF 211
>03_06_0317 +
33097257-33097336,33098500-33098926,33100007-33100078,
33100490-33100600,33100973-33101173,33102157-33102222
Length = 318
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -2
Query: 435 ESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVE-CVDAETTAD 274
E S + ESD + I P N E +N GEV+C + +D+ET D
Sbjct: 35 EMSTDEESDGVVICPPDGNNDDREEAISSNNHDNCQEGEVTCVKDPVIDSETQED 89
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 429 SKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVEC-VDAETTADGNV 265
S+ENE + + VL ++ PEV E + NDD S V+ + + + +GNV
Sbjct: 262 SEENEEGEMEEDGMVLNSE--PEVVELRMDTNDDVNNASVGVDMETELQRSPNGNV 315
>01_06_0785 - 31985455-31988463
Length = 1002
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 431 DSGTLFSSRGRNISCSEEIFFS 496
D+GTLFS+ RN+S S F S
Sbjct: 9 DAGTLFSAPSRNLSSSSSAFVS 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,664,833
Number of Sequences: 37544
Number of extensions: 265947
Number of successful extensions: 871
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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