Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13k23
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-4|CAC35836.2| 582|Caenorhabditis elegans Hypothetical ... 62 5e-10
U97550-3|AAK18981.2| 423|Caenorhabditis elegans Hypothetical pr... 36 0.022
AC006761-5|AAF60550.3| 425|Caenorhabditis elegans Hypothetical ... 36 0.029
U67950-2|AAP13772.1| 147|Caenorhabditis elegans Hypothetical pr... 34 0.090
U67950-1|AAP13771.1| 465|Caenorhabditis elegans Hypothetical pr... 34 0.090
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z49969-2|CAA90270.1| 564|Caenorhabditis elegans Hypothetical pr... 31 1.1
U49830-12|AAL16311.1| 363|Caenorhabditis elegans Hypothetical p... 31 1.1
U23517-8|AAM98041.1| 605|Caenorhabditis elegans A kinase anchor... 30 1.5
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor... 30 1.5
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor... 30 1.5
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch... 30 1.5
AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical... 30 1.5
U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC024791-3|AAF60673.1| 468|Caenorhabditis elegans Hypothetical ... 29 2.6
AF067947-7|AAK68397.2| 295|Caenorhabditis elegans Hypothetical ... 29 3.4
AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical ... 29 3.4
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z29560-9|CAA82661.3| 148|Caenorhabditis elegans Hypothetical pr... 29 4.5
U70846-2|ABI18146.1| 647|Caenorhabditis elegans Hypothetical pr... 29 4.5
U70846-1|AAB09104.4| 510|Caenorhabditis elegans Hypothetical pr... 29 4.5
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF101319-4|AAC69352.1| 463|Caenorhabditis elegans Hypothetical ... 29 4.5
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical... 28 5.9
AC024841-3|AAK68542.1| 185|Caenorhabditis elegans Hypothetical ... 28 7.8
>AL132904-4|CAC35836.2| 582|Caenorhabditis elegans Hypothetical
protein Y111B2A.8 protein.
Length = 582
Score = 61.7 bits (143), Expect = 5e-10
Identities = 26/68 (38%), Positives = 43/68 (63%)
Frame = -2
Query: 726 EKLYSNLSLTIGDVRTKKKDWEEKLQKCRSSITLYEALEVIVRTESHRLLLVNKDDMLIG 547
E Y L T+ + + +W E +Q C + +L++ LE IV+ E HRL++ ++D ++G
Sbjct: 433 ESSYDKLDCTVQEALQHRSEWFEGVQTCLETDSLFQVLEAIVKAEVHRLIVTDQDKKVVG 492
Query: 546 IVSLSDIL 523
+VSLSDIL
Sbjct: 493 VVSLSDIL 500
>U97550-3|AAK18981.2| 423|Caenorhabditis elegans Hypothetical
protein T20F7.6 protein.
Length = 423
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/50 (30%), Positives = 32/50 (64%)
Frame = -2
Query: 663 EEKLQKCRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYL 514
+E++ R + + ++A+ V+V HRL VN+ + G++SLSD++ ++
Sbjct: 302 DERVVSVRDNESFWKAVNVLVDHNVHRLCAVNEHGGIEGVISLSDVINFM 351
>AC006761-5|AAF60550.3| 425|Caenorhabditis elegans Hypothetical
protein Y41G9A.3 protein.
Length = 425
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = -2
Query: 630 TLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYL 514
TL+ +E+ + HR+ +V+ +L GI+SLSD++ +L
Sbjct: 369 TLWSLIEIFIDKNVHRIFMVDDRTILKGIISLSDVIEFL 407
>U67950-2|AAP13772.1| 147|Caenorhabditis elegans Hypothetical
protein T01B6.3b protein.
Length = 147
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = -2
Query: 663 EEKLQKCRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRI--IPSEK 490
+ +L RSS T++E + ++ ++ L ++++ ++ +VS SDIL Y+ P+E
Sbjct: 72 QSRLVYGRSSYTVFETVAKMMTSDKSSLPIIDEGKRILAVVSCSDILSYIQTAERTPTED 131
Query: 489 KISS 478
+ SS
Sbjct: 132 RSSS 135
>U67950-1|AAP13771.1| 465|Caenorhabditis elegans Hypothetical
protein T01B6.3a protein.
Length = 465
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = -2
Query: 663 EEKLQKCRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRI--IPSEK 490
+ +L RSS T++E + ++ ++ L ++++ ++ +VS SDIL Y+ P+E
Sbjct: 390 QSRLVYGRSSYTVFETVAKMMTSDKSSLPIIDEGKRILAVVSCSDILSYIQTAERTPTED 449
Query: 489 KISS 478
+ SS
Sbjct: 450 RSSS 453
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
protein W06A7.3f protein.
Length = 2488
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = -2
Query: 483 SSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAE----NDDTGEV 316
S +EIF K E++ + E+DT +P G + PE N EK E ND+T E+
Sbjct: 676 SQTEEIFTDDNVKKSKENTPKAENDTEINYLP--GGEEGPEDNAEKRNEAVSPNDETSEI 733
Query: 315 SCNVECVD-AETTADGNVE 262
++E ++ + D NV+
Sbjct: 734 KQDLENLENGASGPDNNVQ 752
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
protein W06A7.3c protein.
Length = 2484
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = -2
Query: 483 SSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAE----NDDTGEV 316
S +EIF K E++ + E+DT +P G + PE N EK E ND+T E+
Sbjct: 676 SQTEEIFTDDNVKKSKENTPKAENDTEINYLP--GGEEGPEDNAEKRNEAVSPNDETSEI 733
Query: 315 SCNVECVD-AETTADGNVE 262
++E ++ + D NV+
Sbjct: 734 KQDLENLENGASGPDNNVQ 752
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
protein W06A7.3a protein.
Length = 2607
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = -2
Query: 483 SSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAE----NDDTGEV 316
S +EIF K E++ + E+DT +P G + PE N EK E ND+T E+
Sbjct: 676 SQTEEIFTDDNVKKSKENTPKAENDTEINYLP--GGEEGPEDNAEKRNEAVSPNDETSEI 733
Query: 315 SCNVECVD-AETTADGNVE 262
++E ++ + D NV+
Sbjct: 734 KQDLENLENGASGPDNNVQ 752
>Z49969-2|CAA90270.1| 564|Caenorhabditis elegans Hypothetical
protein W01C9.2 protein.
Length = 564
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -2
Query: 459 PLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEV 316
PL + P S+++ E+ S+E+ +LGN+ + +EE + EN E+
Sbjct: 156 PLSIRRNPTSTQDIEALVSSVEMMLLGNETMFFGDEEGSGENSGNDEI 203
>U49830-12|AAL16311.1| 363|Caenorhabditis elegans Hypothetical
protein C33F10.13 protein.
Length = 363
Score = 30.7 bits (66), Expect = 1.1
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Frame = -2
Query: 699 TIGDVRTKKKDWEEKLQ-KCRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDIL 523
T+ + K E+L K R SI L + +I+RT+ HR + + L I + L
Sbjct: 31 TLSFISKKTNSLIERLNIKARVSIRLDSEVVIIIRTDEHRDMSIY---FLTDIFRIPGAL 87
Query: 522 VYLNRIIPSEKKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLG 379
Y RI P + + L E+ L + VP D S E+P LG
Sbjct: 88 NY-QRIGPPFQNMPGLIELV--LSNDFVPLDQPYLPEDESSWEMPQLG 132
>U23517-8|AAM98041.1| 605|Caenorhabditis elegans A kinase anchor
protein protein1, isoform c protein.
Length = 605
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -2
Query: 453 EENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDA-ETTA 277
+E PE++ ++ ++ S E P G+Q+ VN E+ EN + E C V VDA
Sbjct: 423 QETLSPETA-DSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTV--VDAVNENT 479
Query: 276 DGNVEKSLE 250
D ++E++ E
Sbjct: 480 DSSIEENDE 488
>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
protein protein1, isoform b protein.
Length = 1284
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -2
Query: 453 EENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDA-ETTA 277
+E PE++ ++ ++ S E P G+Q+ VN E+ EN + E C V VDA
Sbjct: 423 QETLSPETA-DSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTV--VDAVNENT 479
Query: 276 DGNVEKSLE 250
D ++E++ E
Sbjct: 480 DSSIEENDE 488
>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
protein protein1, isoform a protein.
Length = 1280
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -2
Query: 453 EENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDA-ETTA 277
+E PE++ ++ ++ S E P G+Q+ VN E+ EN + E C V VDA
Sbjct: 423 QETLSPETA-DSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTV--VDAVNENT 479
Query: 276 DGNVEKSLE 250
D ++E++ E
Sbjct: 480 DSSIEENDE 488
>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
protein protein.
Length = 1280
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -2
Query: 453 EENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDA-ETTA 277
+E PE++ ++ ++ S E P G+Q+ VN E+ EN + E C V VDA
Sbjct: 423 QETLSPETA-DSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTV--VDAVNENT 479
Query: 276 DGNVEKSLE 250
D ++E++ E
Sbjct: 480 DSSIEENDE 488
>AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical
protein C46E10.9 protein.
Length = 393
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +3
Query: 195 LREYLYSFLHHHNHYKYHIRGFFQRFRLQSFLHQHIRHYMKLHRYHHSP 341
L+E+LY+ L +H+ + F +FR + +H+ H+ + ++ +P
Sbjct: 253 LQEHLYTHLKERSHFDCPMLNCFTQFRSHLEIQRHLEHHHLVSPHNLAP 301
>U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical
protein F53A9.2 protein.
Length = 83
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +3
Query: 222 HHHNHYKYHIRGFFQRF--RLQSFLHQHIRHYMKLHRYHH 335
HHH H+ +H F L H H H+ H +HH
Sbjct: 41 HHHGHH-HHHHSFLHELGHALTGHHHHHHGHHFGHHHHHH 79
>AC024791-3|AAF60673.1| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.13 protein.
Length = 468
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = -2
Query: 516 LNRIIPSEKKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAE 337
+ R+ +EK+ +E + +ENK E S ++ I + ++ EV+E+K +
Sbjct: 311 MERMAKAEKEEKEKEEKEKKEKENKENELSADSMKTAIPAKSAKAESEVAGEVDEQKKVK 370
Query: 336 NDDTGE 319
++ +GE
Sbjct: 371 DNSSGE 376
>AF067947-7|AAK68397.2| 295|Caenorhabditis elegans Hypothetical
protein T10B5.3 protein.
Length = 295
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 426 KENESDTISIEVP--VLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETTADGNVEKSL 253
K ++ + ++ P V N + + T +DD GE S + D E D +
Sbjct: 202 KRRTNNVVIVQQPLVVFNNDLDSDSEDFDTIGSDDDGESSEDDWWEDNELKEDEEENQDD 261
Query: 252 EYDICNDCDDAEMNIDT 202
+ + ND DD+EM+ D+
Sbjct: 262 DDEDDNDSDDSEMDADS 278
>AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical
protein F32D1.9 protein.
Length = 513
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = -2
Query: 453 EENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETTAD 274
EE+ V D I ++ V+ + VP+ +E+TAEN + E + + AE + +
Sbjct: 17 EEHAVAPVEDSENPDVIQLDDDVIPEEDVPD--DEETAENLENLENVLDDSEIIAENSGE 74
Query: 273 GNVEKSLEYDICNDCDDAE 217
+ E E + D DD++
Sbjct: 75 ADQEVEEEDNPFADDDDSD 93
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -2
Query: 399 IEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETTADGNVEKSLEYDICNDCDDA 220
I VP+LG+Q N E +N D E+ ETT GNV + + + CDD
Sbjct: 116 IWVPLLGSQ-----NPENHLKNGDAFEIR------KVETTNQGNVSAKVAFSLRTFCDDT 164
Query: 219 E 217
+
Sbjct: 165 D 165
>Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical
protein F01G4.5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 310 T*NFTGIIILRSFFFIYFWNCLVP*NWDFYRN 405
T +FT +++L F IY WN P NW++ N
Sbjct: 23 TFSFTRLLLLDVAFSIYLWNIWTP-NWEWTVN 53
>Z29560-9|CAA82661.3| 148|Caenorhabditis elegans Hypothetical
protein K03H1.9 protein.
Length = 148
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 225 HHNHYKYHIRGFFQRFRLQSFLHQHIRHYMKLHRY-HHS 338
HH H++YH+ +RL H H L + HHS
Sbjct: 7 HHQHHRYHLLLLRLHYRLHRLRHPFHHHRKMLWQMTHHS 45
>U70846-2|ABI18146.1| 647|Caenorhabditis elegans Hypothetical
protein D1073.1b protein.
Length = 647
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 438 PESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETTADGNV 265
P +S E E + + E + Q V + EK+ D+G V+ + EC + D ++
Sbjct: 589 PLNSSEIEVNDVPTENGKVNGQTVEKAEYEKSESESDSGAVTFHGECSEDPLLCDRSI 646
>U70846-1|AAB09104.4| 510|Caenorhabditis elegans Hypothetical
protein D1073.1a protein.
Length = 510
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 438 PESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETTADGNV 265
P +S E E + + E + Q V + EK+ D+G V+ + EC + D ++
Sbjct: 452 PLNSSEIEVNDVPTENGKVNGQTVEKAEYEKSESESDSGAVTFHGECSEDPLLCDRSI 509
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -2
Query: 492 KKISSLQEIFRP-LEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEV 316
+++ Q+I LE+N+ P S ES++ + P + + ++K A+N T EV
Sbjct: 958 ERVGKEQQIIEDSLEQNRKPSSKTVKESESREAQEPRIEKDEMESEQQKKDADN-PTVEV 1016
Query: 315 SCNVECVDAETTADGNVEKSLE 250
E +E+ +++L+
Sbjct: 1017 DKESEASSSESDKSDFEDETLD 1038
>AF101319-4|AAC69352.1| 463|Caenorhabditis elegans Hypothetical
protein K08D9.2 protein.
Length = 463
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 165 EHFNYY*NIGLREYLYSFLHHHNHYKYHIRGFFQRFRLQSFLHQHIRHYMKLHRYHHSPQ 344
E +Y +G + Y Y L + N Y + I ++ +F + H +I + KL+ HS Q
Sbjct: 203 ESVEHYRLLGAK-YFYFTLFNINEYDFKILSYYAKFGYAEYTH-YITQHKKLNWKAHSIQ 260
>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
protein Y51A2D.15 protein.
Length = 1222
Score = 28.3 bits (60), Expect = 5.9
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Frame = -2
Query: 573 VNKDDMLIGIVS--LSDILVYLNRI-----IPSEKKISSLQEIFRPLEENKVPESSKENE 415
+N DD LI + + + LV + R I ++I L ++ R +E+ + ES NE
Sbjct: 710 INNDDELIDNIDDIMMNALVAVKRERDDLRIQGNQQIQELHDLKRDIEKLRRSESESLNE 769
Query: 414 SDTISIEVP----------VLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETTA 277
SD E+ + + + E+N E + +ND+ V ++E ++ +TA
Sbjct: 770 SDDRVRELTRENMHTKEQVFMLQEKLRELNLELSTKNDEIDMVKASIEELNRNSTA 825
>AC024841-3|AAK68542.1| 185|Caenorhabditis elegans Hypothetical
protein Y59H11AM.4 protein.
Length = 185
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 498 SEKKISSLQEIFRPLEENKVPESSKENESDTISIE-VPVLGNQAVPEVNEEKTAENDDTG 322
++KK S+++ +P E K E+ EN+ IS E + PE+ ++K+ +D
Sbjct: 109 TQKKQKSVRKTAKPKNEEKDAEAPVENDDKKISEEGINKTDKTEEPELEKKKSELSDSKK 168
Query: 321 E 319
E
Sbjct: 169 E 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,994
Number of Sequences: 27780
Number of extensions: 281851
Number of successful extensions: 1077
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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