Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k22
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    28   1.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.3  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   7.6  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    25   7.6  

>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 558 FLKLFVDNVFAKILMLSI*ENLRLLIFCVYFLFRS 662
           ++ L +DN +    ++S+ EN+ L IF + FLF++
Sbjct: 11  YISLSIDNNYLVTTLISLKENVFLHIFTLTFLFKA 45


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 295  TALKTSTICAKLLTCSARLNKSTLWSCLL*NSTFYATCV 179
            ++ K STIC  +L  S      T W C L NS     CV
Sbjct: 3549 SSAKLSTICRSVLKASVNSALLTSWICFL-NSIGAINCV 3586


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 20/81 (24%), Positives = 33/81 (40%)
 Frame = -3

Query: 503 NSLETLPSAANYGSLLKRLNLYNLDHIEMNVNFYELLFPLTLYNDNDNSDKTLSHQLVNY 324
           ++  ++PS  +  S+      Y+ +  E+NVN Y    P T YND      T S+     
Sbjct: 308 STASSIPSNCSCPSVKSSGPSYHAEQ-EVNVNSYNGGIPSTSYNDTPQQSVTGSYNSGET 366

Query: 323 IFLASNYFQNCAKNFNYMRET 261
           +    N      ++ N M  T
Sbjct: 367 MSTYLNQTNTSGRSPNSMEAT 387


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 19/98 (19%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = -3

Query: 602 H*NFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLET-LPSAANYGSLLKRLNLYNLDH 426
           H + +K  +N + + I  ++  + ++   C     + T + S    G   K + L + + 
Sbjct: 210 HNSSTKTTINRRKKAIGTISSLLSKITSSCYVAIFVTTQMTSKVVSGIGAKLIPLLSTNW 269

Query: 425 IEMNVNFYELLFPLTLYNDNDNSDKTLSHQLVNYIFLA 312
           ++ N+++  +L+      ++ +     SHQL+ Y F+A
Sbjct: 270 LD-NLSYRLILYSRHSTEESKDGQSRPSHQLLRYAFMA 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,411
Number of Sequences: 5004
Number of extensions: 51239
Number of successful extensions: 186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)