Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13k20
(725 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 28 0.078
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 24 1.3
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 24 1.3
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 24 1.3
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 23 2.2
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 23 2.2
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 23 2.2
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 23 2.2
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 23 2.2
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 23 2.2
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 23 2.2
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 23 2.2
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 2.2
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 2.2
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 2.9
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 22 5.1
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 22 5.1
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 22 5.1
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 22 5.1
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 22 5.1
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 22 5.1
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 22 5.1
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 5.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 5.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 5.1
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 9.0
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 21 9.0
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 21 9.0
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 28.3 bits (60), Expect = 0.078
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = -3
Query: 588 QRHCQRKASKNYCGHRRYETVVRILQLQKFFRDFTKRRQLWQLAQKAKPVQSRSY*NECK 409
+R C R S+ Y RRY+ + + +K R+ T RR+ +++ + +SY NE +
Sbjct: 250 ERSCSRDRSREYKKDRRYDQLHNV--EEKHLRERTSRRRY----SRSREREQKSYKNERE 303
Query: 408 F 406
+
Sbjct: 304 Y 304
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 24.2 bits (50), Expect = 1.3
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -1
Query: 569 KLQKIIVVTDGMKRLYEYCNCKNSLETLPSAANYGSLLKRLNLYNLDHIE 420
K KII + + Y Y N N+ NY + K+L YN+ +IE
Sbjct: 77 KEPKIISNNNSLSNNYNYNNNYNNYNN-----NYNTNYKKLQYYNIINIE 121
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 24.2 bits (50), Expect = 1.3
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = -3
Query: 588 QRHCQRKASKNYCGHRRYETVVRILQLQKFFRDFTKRRQLWQLAQKAKPVQSRSY*NECK 409
+R C R ++ Y RRYE + + +K + T R++ +++ + SY NE +
Sbjct: 1 ERSCSRDRNREYRKDRRYEKLHN--EKEKLLEERTNRKR----NSRSREREQNSYKNERE 54
Query: 408 F 406
+
Sbjct: 55 Y 55
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 24.2 bits (50), Expect = 1.3
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = -3
Query: 588 QRHCQRKASKNYCGHRRYETVVRILQLQKFFRDFTKRRQLWQLAQKAKPVQSRSY*NECK 409
+R C R ++ Y RRYE + + +K + T R++ +++ + SY NE +
Sbjct: 1 ERSCSRDRNREYRKDRRYEKLHN--EKEKLLEERTNRKR----NSRSREREQNSYKNERE 54
Query: 408 F 406
+
Sbjct: 55 Y 55
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 491 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
+L + NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 87 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 491 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
+L + NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 87 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 491 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
+L + NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 87 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 491 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
+L + NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 87 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 491 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
+L + NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 87 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 491 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
+L + NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 87 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 491 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
+L + NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 87 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 491 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
+L + NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 87 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 491 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
+L + NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 320 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 362
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 491 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
+L + NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 320 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 362
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 473 NYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 366
NY + N +N + + N+N+ E + P+ +Y N
Sbjct: 93 NYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -1
Query: 596 EFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETLPSAANYGSLLKRLNLYNLDHIE 420
E S+D + K + + Y+Y N N NY + K+L YN+ +IE
Sbjct: 65 ERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNN------NYNTNYKKLQYYNIINIE 117
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -1
Query: 596 EFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETLPSAANYGSLLKRLNLYNLDHIE 420
E S+D + K + + Y+Y N N NY + K+L YN+ +IE
Sbjct: 65 ERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNN------NYNTNYKKLQYYNIINIE 117
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -1
Query: 596 EFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETLPSAANYGSLLKRLNLYNLDHIE 420
E S+D + K + + Y+Y N N NY + K+L YN+ +IE
Sbjct: 65 ERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNN------NYNTNYKKLQYYNIINIE 117
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -1
Query: 596 EFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETLPSAANYGSLLKRLNLYNLDHIE 420
E S+D + K + + Y+Y N N NY + K+L YN+ +IE
Sbjct: 65 ERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNN------NYNTNYKKLQYYNIINIE 117
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -1
Query: 596 EFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETLPSAANYGSLLKRLNLYNLDHIE 420
E S+D + K + + Y+Y N N NY + K+L YN+ +IE
Sbjct: 65 ERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNN------NYNTNYKKLQYYNIINIE 117
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -1
Query: 596 EFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETLPSAANYGSLLKRLNLYNLDHIE 420
E S+D + K + + Y+Y N N NY + K+L YN+ +IE
Sbjct: 65 ERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNN------NYNTNYKKLQYYNIINIE 117
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -1
Query: 596 EFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETLPSAANYGSLLKRLNLYNLDHIE 420
E S+D + K + + Y+Y N N NY + K+L YN+ +IE
Sbjct: 65 ERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNN------NYNTNYKKLQYYNIINIE 117
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 332 VNYIFLASNYFQNCAKNFNYM 270
++YIFL N FQ+ +++F +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 332 VNYIFLASNYFQNCAKNFNYM 270
++YIFL N FQ+ +++F +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 332 VNYIFLASNYFQNCAKNFNYM 270
++YIFL N FQ+ +++F +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.4 bits (43), Expect = 9.0
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -2
Query: 328 ITYFWPVTIFKTAL 287
I +WP+ +FK A+
Sbjct: 378 IILYWPILLFKKAM 391
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/40 (20%), Positives = 20/40 (50%)
Frame = -1
Query: 371 DNDNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRETFNV 252
D +++ ++++ + + NY N N NY + +N+
Sbjct: 291 DRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNI 330
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 392 FPLTLYNDNDNSDKTLS 342
F L +YN++DNS + L+
Sbjct: 209 FALIIYNNSDNSFQRLT 225
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,494
Number of Sequences: 438
Number of extensions: 3917
Number of successful extensions: 33
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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