Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k19
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    28   1.6  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    27   3.6  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    26   6.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   8.4  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 103 ATLQNILLG*HNANRNLFIQKHNNTILIKKTLSNLNGKKN 222
           +T Q IL    N N N+F   HN T+ +  TL+    + N
Sbjct: 431 STNQIILKNQENINNNMFGSIHNTTLSLNSTLNTFMNELN 470


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 22  HHKLKSNSNKNMITFKLNHVADFG*NMATLQ 114
           HHK K   NK +  FKL+  A    ++ TLQ
Sbjct: 506 HHKKKKGGNKRVFGFKLHKYAKPTKSVKTLQ 536


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 76  HVA-DFG*NMATLQNILLG*HNANRNLFIQKHNNT 177
           H+A D    +  L N LL  H+A   + I +HNNT
Sbjct: 118 HLAHDIQLKLDELGNALLNDHSAGPQIVISEHNNT 152


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 151 LFIQKHNNTILIKKTLSNLNG 213
           L ++ HN   L+K T SNL+G
Sbjct: 470 LIVKNHNQLSLLKCTFSNLDG 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,649
Number of Sequences: 5004
Number of extensions: 39667
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)