Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13k12
(219 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 29 0.063
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 0.59
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 0.78
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 26 0.78
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 1.4
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 25 1.8
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 1.8
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 24 3.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 4.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 23 4.1
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 23 4.1
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 23 7.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 22 9.6
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 22 9.6
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 22 9.6
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 22 9.6
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 29.5 bits (63), Expect = 0.063
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 181 HRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLT 26
HR+DI++ Q + L+ K Q +N+ ++ K + EK + L DN++
Sbjct: 59 HRIDILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVS 110
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.2 bits (55), Expect = 0.59
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -3
Query: 181 HRVD--IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKS 68
HR++ ++ ++ E++ +S L++L+ Q+D N N+K+
Sbjct: 735 HRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKA 774
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 0.78
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 88 VSDNIKSMSEKLKRLECDNLTDQPL 14
++ +KSM+E++ L D+L QPL
Sbjct: 431 IASKVKSMNERIDELPEDSLRTQPL 455
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.8 bits (54), Expect = 0.78
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 92 FVDLRFDQRLEQRHVNQLFKLIHINYINPMRIWCVKY 202
F RF+Q+ +R + L + N I PM+++C KY
Sbjct: 586 FKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFC-KY 621
>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 126
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 94 ENVSDNIKSMSEKLKRLECDN 32
ENV + K + EK+K LE DN
Sbjct: 99 ENVLASYKHLCEKIKYLEADN 119
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 24.6 bits (51), Expect = 1.8
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -3
Query: 166 INMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDQPLRYTV 2
I D+ E L+ + ++S + + DNI S R + D+P+R T+
Sbjct: 11 IEQDEMENLLRMDPVRSSLDVESRAIEPDNIAGESIVETRFTGGDSLDEPIRVTL 65
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -3
Query: 211 LKNIFYAPYTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMS 62
+KNI PY H D+ + +L+++ L+ +++T ++ N+K S
Sbjct: 388 IKNI---PYEHEYDLKSQSMRSKLMSLHLIYHILRTYMNILSDINVKIRS 434
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 202 IFYAPYTHRVDIINMDQFEQLINVSLLKSLI 110
I PYT ++ + F+QL+N+ L ++
Sbjct: 623 ILLIPYTRKIAKLLFSNFKQLLNLMLFLVIV 653
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 151 FEQLINVSLLKSLIKTQID 95
F+ L+++ LKS+ +TQ+D
Sbjct: 3741 FKHLVSLQSLKSISRTQVD 3759
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 119 LEQRHVNQLFKLIHINYINPMRI 187
LEQ + L KL+ I+Y N RI
Sbjct: 1186 LEQPRLYSLQKLVEISYYNMQRI 1208
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 103 QIDENVSDNIKSMSEKLKRLECDNLT 26
+I EN+ DN + + L CDN+T
Sbjct: 257 KIAENLMDNCIASDTETTGLGCDNMT 282
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -3
Query: 160 MDQFEQLINVSLLKSLIKTQIDEN--VSDN 77
+D + + V L L KTQ DEN SDN
Sbjct: 136 LDSNDNELTVMKLSQLYKTQHDENDDASDN 165
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 118 SLIKTQIDENVSDNIKSMSEKLKRLECDN 32
S + Q D+ ++ EKLK L C N
Sbjct: 1839 SKVPHQFDDEEGKALQIFREKLKDLNCKN 1867
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 211 LKNIFYAPYTHRVDIINMDQFEQLIN 134
L N F P + V N D++EQLIN
Sbjct: 571 LNNDFKKPACNNVT--NSDEYEQLIN 594
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 22.2 bits (45), Expect = 9.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 124 LKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDQPLRYTV 2
L SLI D + K E +NLT++P YTV
Sbjct: 1061 LVSLISRARDPDYYSRPTIEEAKTVLAESENLTNKPEEYTV 1101
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +2
Query: 125 QRHVNQLFKLI---HINYINPMRIW 190
Q +V++L+ L+ HIN N +W
Sbjct: 417 QNNVDELYSLVKFLHINPFNDQSVW 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,955
Number of Sequences: 5004
Number of extensions: 9936
Number of successful extensions: 42
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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