Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13k12
(219 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0106 + 1102880-1105691,1105781-1105806 27 1.6
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742... 27 2.1
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 26 4.7
10_08_0025 - 14243249-14243377,14243935-14244174,14244266-142443... 25 6.3
07_03_0075 - 13096386-13096554,13096642-13096766,13096851-130971... 25 6.3
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 25 6.3
01_06_1814 + 40061080-40061395,40062243-40062641,40062758-40062864 25 6.3
11_01_0755 - 6343084-6345172,6345526-6346367 25 8.3
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 25 8.3
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 163 NMDQFEQLINVSLLKSLIKTQIDE--NVSDNIKSMSEKLKRLECDNLTDQPL 14
N D+ +Q+IN ++S Q+D +V N++ +S + L+ L++ P+
Sbjct: 547 NYDRVQQIINAQRIRSFYPYQLDSDYSVMSNVQWVSTSARYLKVLELSNIPI 598
>07_03_0532 +
19171290-19171394,19173122-19173302,19173761-19174245,
19174877-19176283,19176413-19176628
Length = 797
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 172 DIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRL 44
DI MD F ++ ++ S K++ ++ S + + EK+KRL
Sbjct: 314 DIGMMDDFLEMEKIASANSPSKSEAEDAASVQLVKLEEKIKRL 356
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 56 FFAHRLDIVRHVFVDLRFDQRLEQRHVNQLFKLIHINYIN 175
F + +L IV+ +DL + +++HV +FK++ + Y+N
Sbjct: 341 FMSLKLGIVQ--VLDLEGCKGFKKQHVKDIFKMLLLKYLN 378
>10_08_0025 -
14243249-14243377,14243935-14244174,14244266-14244360,
14245120-14245198,14249528-14250202,14250288-14250338,
14250439-14250813
Length = 547
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 187 YTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNL-TDQPLR 11
Y H +D + E+L + + + E D +++ EKLK C+++ D+ +R
Sbjct: 399 YWH-LDPKKSESEEELTKIRRERGYSYFDLTEICPDKLENYEEKLKSFYCEHIHADEEIR 457
Query: 10 Y 8
Y
Sbjct: 458 Y 458
>07_03_0075 -
13096386-13096554,13096642-13096766,13096851-13097117,
13097506-13097587,13097956-13098172,13098260-13098360,
13098425-13098627,13099261-13099334,13100246-13100429
Length = 473
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -3
Query: 97 DENVSDNIKSMSEKLKRLECDNLTDQPLRYTV 2
D ++S+ + EKLK L +N +++ +R+T+
Sbjct: 222 DLDISEEMAFKDEKLKELVYNNASERTIRHTM 253
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -3
Query: 151 FEQLINVSLLKSLIKTQIDENV----SDNIKSMSEKLKRLEC 38
F ++ V +L++L +I + SDN +S+ +K K+L C
Sbjct: 710 FGAMVQVKMLEALQDIEIASKLVGFDSDNDESLDDKYKKLRC 751
>01_06_1814 + 40061080-40061395,40062243-40062641,40062758-40062864
Length = 273
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/20 (35%), Positives = 17/20 (85%)
Frame = -3
Query: 64 SEKLKRLECDNLTDQPLRYT 5
++K+K++EC+ T QP++++
Sbjct: 228 AKKMKQIECNTETQQPVKFS 247
>11_01_0755 - 6343084-6345172,6345526-6346367
Length = 976
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 95 VDLRFDQRLEQRHVNQLFKLIHINYI 172
+DL L+ HV ++KL+H+ Y+
Sbjct: 582 LDLEECDDLKDDHVKYIYKLLHLKYL 607
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -3
Query: 97 DENVSDNIKSMSEKL 53
DE++ D++KS+SEKL
Sbjct: 78 DEDMQDSVKSLSEKL 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,883,704
Number of Sequences: 37544
Number of extensions: 48522
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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