Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k12
         (219 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010084-1|AAQ22553.1| 1059|Drosophila melanogaster LD05615p pro...    27   3.6  
AE014296-3744|AAF51884.1| 1059|Drosophila melanogaster CG11133-P...    27   3.6  
AY070966-1|AAL48588.1|  590|Drosophila melanogaster RE06471p pro...    27   4.7  
AE014296-2567|AAF49587.1|  590|Drosophila melanogaster CG7297-PA...    27   4.7  
AE014134-2820|ABI31319.1|  122|Drosophila melanogaster CG34106-P...    26   6.2  
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc...    26   8.2  

>BT010084-1|AAQ22553.1| 1059|Drosophila melanogaster LD05615p
           protein.
          Length = 1059

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 145 QLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDQPLR 11
           ++I     + +I+  IDENV D+ +  + K        +TDQP +
Sbjct: 737 EMIREFFAEVIIEDDIDENVQDSKEKANSKPHEKMKGKMTDQPAK 781


>AE014296-3744|AAF51884.1| 1059|Drosophila melanogaster CG11133-PA
           protein.
          Length = 1059

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 145 QLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDQPLR 11
           ++I     + +I+  IDENV D+ +  + K        +TDQP +
Sbjct: 737 EMIREFFAEVIIEDDIDENVQDSKEKANSKPHEKMKGKMTDQPAK 781


>AY070966-1|AAL48588.1|  590|Drosophila melanogaster RE06471p
           protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 80  VRHVFVDLRFDQRLEQRHVNQLFKLIHINYINPMRIWCVKY 202
           V H+F D  F  R   +  N   KLI  NY     IW  +Y
Sbjct: 348 VGHLFRDGNFQIRYTNKDKNSEKKLISRNYRRVAEIWLDEY 388


>AE014296-2567|AAF49587.1|  590|Drosophila melanogaster CG7297-PA
           protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 80  VRHVFVDLRFDQRLEQRHVNQLFKLIHINYINPMRIWCVKY 202
           V H+F D  F  R   +  N   KLI  NY     IW  +Y
Sbjct: 348 VGHLFRDGNFQIRYTNKDKNSEKKLISRNYRRVAEIWLDEY 388


>AE014134-2820|ABI31319.1|  122|Drosophila melanogaster CG34106-PA
           protein.
          Length = 122

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 104 ANRRKRVGQYQVDERKTKKARMRQSHRP 21
           ANR +   +++V+ +  K+   R+SHRP
Sbjct: 66  ANRNRLKEEHRVNTKSYKRRERRRSHRP 93


>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
           transcriptase polyprotein protein.
          Length = 1041

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 163 NMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNL 29
           ++  F+ +I + LLK    T   +N + NI +  E ++ L CD++
Sbjct: 90  SLSSFDAIIGLDLLKQGNATLDFKNKTLNINNEVESIQFLRCDSV 134


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,877,115
Number of Sequences: 53049
Number of extensions: 92813
Number of successful extensions: 345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 24,988,368
effective HSP length: 52
effective length of database: 22,229,820
effective search space used: 444596400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)