Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13k12
(219 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 29 0.59
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 29 0.59
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 29 0.59
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 29 0.59
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 29 0.59
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical... 28 1.0
U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical pr... 25 5.5
AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidas... 25 5.5
AL132862-28|CAB60545.2| 610|Caenorhabditis elegans Hypothetical... 25 5.5
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 25 5.5
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 25 5.5
Z92830-6|CAB07359.2| 360|Caenorhabditis elegans Hypothetical pr... 25 7.3
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr... 25 7.3
U28732-4|AAB04900.1| 257|Caenorhabditis elegans Hypothetical pr... 25 7.3
AF045643-4|AAC02597.3| 529|Caenorhabditis elegans Ligand-gated ... 25 7.3
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 25 9.6
U41748-4|AAA83337.2| 230|Caenorhabditis elegans Hypothetical pr... 25 9.6
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 25 9.6
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 25 9.6
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 28.7 bits (61), Expect = 0.59
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 169 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTD 23
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAE 189
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 28.7 bits (61), Expect = 0.59
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 169 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTD 23
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAE 189
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 28.7 bits (61), Expect = 0.59
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 169 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTD 23
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAE 189
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 28.7 bits (61), Expect = 0.59
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 169 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTD 23
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAE 203
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 28.7 bits (61), Expect = 0.59
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 169 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTD 23
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAE 189
>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
protein Y67A10A.3 protein.
Length = 1237
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 94 ENVSDNIKSMSEKLKRLECDNLTDQPLRYTV 2
E++SD ++S+ L LEC N+T L+ V
Sbjct: 385 EDISDRVESLKGFLAELECYNITRDDLKAIV 415
>U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical
protein C14C11.3 protein.
Length = 596
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 157 DQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKL 53
D+ E + S+ + IDE + +N+ MSEKL
Sbjct: 537 DRVESDLRASMKDLYFENTIDEFIYENLGEMSEKL 571
>AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidase
protein.
Length = 596
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 157 DQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKL 53
D+ E + S+ + IDE + +N+ MSEKL
Sbjct: 537 DRVESDLRASMKDLYFENTIDEFIYENLGEMSEKL 571
>AL132862-28|CAB60545.2| 610|Caenorhabditis elegans Hypothetical
protein Y73F8A.19 protein.
Length = 610
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -3
Query: 160 MDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTD 23
+D+ E++ N ++ Q ++ DN++ ++ RLECDN +D
Sbjct: 474 LDEIERMGNAG---KRLEYQGRKSERDNLQFVNATKTRLECDNYSD 516
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 104 RFDQRLEQRHVNQLFKLIHINYINPMRI 187
RF+ L+QRHV L + + +N + R+
Sbjct: 747 RFESLLQQRHVQLLGRSVDLNRVVSQRV 774
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 104 RFDQRLEQRHVNQLFKLIHINYINPMRI 187
RF+ L+QRHV L + + +N + R+
Sbjct: 747 RFESLLQQRHVQLLGRSVDLNRVVSQRV 774
>Z92830-6|CAB07359.2| 360|Caenorhabditis elegans Hypothetical
protein F11A5.7 protein.
Length = 360
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -3
Query: 217 RGLKNIFYAPYTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLEC 38
+ ++ IF + +R ++ N + E L V+ ++ I E D + KLKR+
Sbjct: 219 KSVQIIFGSLIINRTNLTNFNFLENLKYVAQMQKDKSAIIVEKNLDLVNISFPKLKRVRS 278
Query: 37 DNL 29
DNL
Sbjct: 279 DNL 281
>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical protein
F18C5.3 protein.
Length = 1490
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 160 MDQFEQLINVSLLKSLIKTQI-DENVSDNIKSMSEKLKRLECDNLTDQ 20
MDQ +Q SL+K+L+K + E + + + +SE R N+ Q
Sbjct: 1005 MDQHKQATMFSLIKALVKRGVRHERLGEIMDHLSETAIRSPLVNIRSQ 1052
>U28732-4|AAB04900.1| 257|Caenorhabditis elegans Hypothetical
protein F45E1.3 protein.
Length = 257
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -3
Query: 169 IINMDQFEQLINVSLLKSLIK---TQIDENVSDNIKSMSEKLKRLECDNLTD 23
I++ D ++L + L + +K T+I +DN KS LKR+ D+L D
Sbjct: 118 ILSTDLVKELADTVALFTRLKQHGTKIAVCTADNRKSSLLALKRMNVDHLVD 169
>AF045643-4|AAC02597.3| 529|Caenorhabditis elegans Ligand-gated ion
channel protein 30 protein.
Length = 529
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 40 ILAFLVFRSST*YCPTRFRRFAF*SKT 120
++ V SS +CP F+RF F S+T
Sbjct: 177 LVRMFVSISSKSFCPINFKRFPFDSQT 203
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -3
Query: 148 EQLINVSLLKSLIKTQIDENVSDNIKSMSE 59
EQ+ ++ + + + I +N+SDN++S+SE
Sbjct: 422 EQMPDIGIPRGQLIGIIADNLSDNLESLSE 451
>U41748-4|AAA83337.2| 230|Caenorhabditis elegans Hypothetical
protein C31H2.3 protein.
Length = 230
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 121 KSLIKTQIDENVSDNIKSMSEK 56
KSLI +Q D+N S+++KS K
Sbjct: 208 KSLIYSQSDDNNSNDVKSKKAK 229
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 118 SLIKTQIDENVSDNIKSMSEKLKRLECDNLTD 23
+L TQIDE ++ + ++ +L L ++TD
Sbjct: 373 TLTSTQIDELLATGVNTLKSRLDELGMPSVTD 404
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 118 SLIKTQIDENVSDNIKSMSEKLKRLECDNLTD 23
+L TQIDE ++ + ++ +L L ++TD
Sbjct: 733 TLTSTQIDELLATGVNTLKSRLDELGMPSVTD 764
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,725,430
Number of Sequences: 27780
Number of extensions: 52170
Number of successful extensions: 274
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -