Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k12
         (219 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   0.56 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   1.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   2.3  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    20   4.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   5.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   5.3  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    19   6.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   9.2  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 0.56
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -3

Query: 196 YAPYTHRVDII-NMDQFEQLI 137
           Y PYT RV+I+ ++D+ + L+
Sbjct: 468 YDPYTQRVEILDSVDRLDNLM 488


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 1.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 100 IDENVSDNIKSMSEKLKRLECDNLTDQ 20
           +DEN + N K+  + ++ +  DN TDQ
Sbjct: 73  VDENGNFNEKNTRDIVQAVLDDNETDQ 99


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 2.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 161 INYINPMRIWCVKYIF 208
           IN INP+ ++   YI+
Sbjct: 33  INSINPINVYTKAYIY 48


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
          protein.
          Length = 129

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 76 YCPTRFRR 99
          Y PTRFRR
Sbjct: 29 YIPTRFRR 36


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 133 VSLLKSLIKTQIDENVSDNIK 71
           VSL KSL    I   V DN++
Sbjct: 309 VSLDKSLEVNHISARVGDNVE 329


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 76  YCPTRFRRFA 105
           YCP RF R A
Sbjct: 430 YCPVRFGRKA 439


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 68  RLDIVRHVFVDLR 106
           R+D + H+F D R
Sbjct: 221 RIDAINHMFEDAR 233


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 6/29 (20%), Positives = 16/29 (55%)
 Frame = +2

Query: 104 RFDQRLEQRHVNQLFKLIHINYINPMRIW 190
           +F+  + ++  N+L ++  +  +   RIW
Sbjct: 86  KFEGEMAEKISNELNEMCPLEKLKERRIW 114


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 13/56 (23%), Positives = 22/56 (39%)
 Frame = -3

Query: 208 KNIFYAPYTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLE 41
           KN+  + +      +  DQ E    V   +  +    +EN  D I  ++E    LE
Sbjct: 250 KNLNLSLHASLNHTLTKDQPETYELVKEWRDFVDNYAEENKRDEIVLLTEAYSSLE 305


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 97  DENVSDNIKSMSE 59
           DE+ ++NIKS  E
Sbjct: 91  DESDNENIKSQKE 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,796
Number of Sequences: 438
Number of extensions: 670
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)