Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13k10
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29488-12|AAA68769.3| 617|Caenorhabditis elegans Hypothetical p... 30 2.2
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe... 29 5.0
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe... 29 5.0
AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction ... 29 5.0
AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin prote... 29 5.0
AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin prote... 29 5.0
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty... 29 5.0
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 28 6.6
AC024821-2|AAP86610.1| 588|Caenorhabditis elegans Hypothetical ... 28 6.6
AC024821-1|AAK68901.2| 456|Caenorhabditis elegans Hypothetical ... 28 6.6
AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical ... 28 8.8
AF016417-3|AAB65281.1| 457|Caenorhabditis elegans Hypothetical ... 28 8.8
>U29488-12|AAA68769.3| 617|Caenorhabditis elegans Hypothetical
protein C56C10.1 protein.
Length = 617
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Frame = -2
Query: 599 SVEIYGIHDNRLNN---KKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDATRAK 429
S+++ G+ D+ N ++ Y + + L NL VI + + HI + RA+
Sbjct: 421 SLKLDGVPDDTYNEFVEMYLQKYGYEHMFELQNLRNSRVI---YARRHIAHDRTISERAR 477
Query: 428 EWQTMSRERRLKNFNLNINYDGPVKI-FVAATAEQKLLLKKTRDAL 294
W+T++R+ R+ N ++ P + +V LL K D +
Sbjct: 478 TWETLARKFRIVKGNEPMDMSNPSDMSYVFGARISPLLCKIVEDTI 523
>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
protein 19,isoform a protein.
Length = 1783
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -2
Query: 692 LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 519
L ++ E D + S S++ + + CD ++D G++++R N Y++ +C
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353
Query: 518 LLNLN-FKHVIESSFD 474
L +N F VI +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369
>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
protein 19,isoform b protein.
Length = 1877
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -2
Query: 692 LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 519
L ++ E D + S S++ + + CD ++D G++++R N Y++ +C
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353
Query: 518 LLNLN-FKHVIESSFD 474
L +N F VI +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369
>AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction
innexin protein.
Length = 362
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = -2
Query: 743 LIWIHLNQLI--NVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYG-IHD 573
+IW L LI N+S++ S ++ + + +K K ++C S ++ G
Sbjct: 118 VIWNALQSLIGINISIVTSNLRKVAKSGFTSENPDIEKKKKEMQCKKKATSRQVDGEFWG 177
Query: 572 NRLNNKKIRNYYLKKICILLNLNF 501
+RL + +L I I +++ F
Sbjct: 178 SRLTTCILATKFLATILIFISMGF 201
>AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin protein
17, isoform b protein.
Length = 266
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = -2
Query: 743 LIWIHLNQLI--NVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYG-IHD 573
+IW L LI N+S++ S ++ + + +K K ++C S ++ G
Sbjct: 118 VIWNALQSLIGINISIVTSNLRKVAKSGFTSENPDIEKKKKEMQCKKKATSRQVDGEFWG 177
Query: 572 NRLNNKKIRNYYLKKICILLNLNF 501
+RL + +L I I +++ F
Sbjct: 178 SRLTTCILATKFLATILIFISMGF 201
>AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin protein
17, isoform a protein.
Length = 362
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = -2
Query: 743 LIWIHLNQLI--NVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYG-IHD 573
+IW L LI N+S++ S ++ + + +K K ++C S ++ G
Sbjct: 118 VIWNALQSLIGINISIVTSNLRKVAKSGFTSENPDIEKKKKEMQCKKKATSRQVDGEFWG 177
Query: 572 NRLNNKKIRNYYLKKICILLNLNF 501
+RL + +L I I +++ F
Sbjct: 178 SRLTTCILATKFLATILIFISMGF 201
>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
calcium channelalpha 1 subunit protein.
Length = 1783
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -2
Query: 692 LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 519
L ++ E D + S S++ + + CD ++D G++++R N Y++ +C
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353
Query: 518 LLNLN-FKHVIESSFD 474
L +N F VI +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 491 IESSFDKNHIVAKLCDATRAKEWQTMS 411
+ES++DK H + + C T + +W T +
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLTFT 157
>AC024821-2|AAP86610.1| 588|Caenorhabditis elegans Hypothetical
protein Y55B1AR.2b protein.
Length = 588
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = -1
Query: 774 TXHIRIXXDIINMDPFEPVD*RVSAQVFDQNANRRKRVGQYQVDERKTKKARMRQSHRQR 595
T I D ++ D D ++ N + Q+ + + K+A+ + HR+R
Sbjct: 16 TYEFTIDDDELSEDGKPSTDQATMCNIYKLNLPASASILSKQIAKSQAKRAKKEERHRRR 75
Query: 594 *DIRYSRQQAE 562
D+ R+Q E
Sbjct: 76 VDLSTVREQDE 86
>AC024821-1|AAK68901.2| 456|Caenorhabditis elegans Hypothetical
protein Y55B1AR.2a protein.
Length = 456
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = -1
Query: 774 TXHIRIXXDIINMDPFEPVD*RVSAQVFDQNANRRKRVGQYQVDERKTKKARMRQSHRQR 595
T I D ++ D D ++ N + Q+ + + K+A+ + HR+R
Sbjct: 16 TYEFTIDDDELSEDGKPSTDQATMCNIYKLNLPASASILSKQIAKSQAKRAKKEERHRRR 75
Query: 594 *DIRYSRQQAE 562
D+ R+Q E
Sbjct: 76 VDLSTVREQDE 86
>AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical
protein Y116F11B.6 protein.
Length = 345
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -2
Query: 686 KTQIDENVSDNIKSMSEKLKRLECDNLTDS-VEIYGIHDNRLNNKKI 549
K +I E+V +NIK KLK++E NL +S E+ H LN K++
Sbjct: 219 KIRIIEDV-ENIKKQDVKLKKIE-KNLKESRKELKEAHQEYLNRKEL 263
>AF016417-3|AAB65281.1| 457|Caenorhabditis elegans Hypothetical
protein F17A9.4 protein.
Length = 457
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 617 CDNLTDSVEIYGIHDNRLNNKKIRNYYLK 531
CDNLT S +I G N N K +N +LK
Sbjct: 7 CDNLTVSSKILGEQLNFRNGKTAQNRFLK 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,518,112
Number of Sequences: 27780
Number of extensions: 267001
Number of successful extensions: 922
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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