Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k09
         (744 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U95171-1|AAB51540.1| 1861|Drosophila melanogaster microtubule as...    31   2.2  
AE014297-3620|AAF56330.3| 1954|Drosophila melanogaster CG6875-PA...    31   2.2  

>U95171-1|AAB51540.1| 1861|Drosophila melanogaster microtubule
           associated protein protein.
          Length = 1861

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 537 SSNILDYFRLRGEPRTPRNKSTVPIICQHSHSVA 436
           S + LD  R+ G+P TP NK+T  +   H+ ++A
Sbjct: 225 SLDTLDCSRIDGQPHTPLNKTTTIVHATHTRALA 258


>AE014297-3620|AAF56330.3| 1954|Drosophila melanogaster CG6875-PA
           protein.
          Length = 1954

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 537 SSNILDYFRLRGEPRTPRNKSTVPIICQHSHSVA 436
           S + LD  R+ G+P TP NK+T  +   H+ ++A
Sbjct: 318 SLDTLDCSRIDGQPHTPLNKTTTIVHATHTRALA 351


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,251,262
Number of Sequences: 53049
Number of extensions: 570071
Number of successful extensions: 944
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)