Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k09
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.3  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   5.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   5.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   5.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   5.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.0  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   7.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   7.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   7.0  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   7.0  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 121 SYFRCVGVGFTSNVMVCSR*QRYF 192
           ++FR  G+  +S V+VC    RY+
Sbjct: 115 AFFRMFGLYLSSFVLVCISMDRYY 138


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 304 TNYYIFNSKHKDIL 345
           TNYY+FN    D+L
Sbjct: 68  TNYYLFNLAVSDLL 81


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 257 NFNMQDTESIPINYVLQIIISLIVNTKIYY 346
           N N +  +   INY+ QI + + V   +YY
Sbjct: 94  NNNYKKLQYYNINYIEQIPVPVPVPVPVYY 123


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 257 NFNMQDTESIPINYVLQIIISLIVNTKIYY 346
           N N +  +   INY+ QI + + V   +YY
Sbjct: 94  NNNYKKLQYYNINYIEQIPVPVPVPVPVYY 123


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 257 NFNMQDTESIPINYVLQIIISLIVNTKIYY 346
           N N +  +   INY+ QI + + V   +YY
Sbjct: 94  NNNYKKLQYYNINYIEQIPVPVPVPVPVYY 123


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 257 NFNMQDTESIPINYVLQIIISLIVNTKIYY 346
           N N +  +   INY+ QI + + V   +YY
Sbjct: 327 NNNYKKLQYYNINYIEQIPVPVPVPVPVYY 356


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 304 TNYYIFNSKHKDILL 348
           TNYY+F+    D+LL
Sbjct: 88  TNYYLFSLAVSDLLL 102


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 78  SRELLCSMFTLWE 40
           +R+L C M+ LWE
Sbjct: 66  TRQLKCYMYCLWE 78


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 257 NFNMQDTESIPINYVLQIIISLIVNTKIYY 346
           N N +  +   INY+ QI + + +   +YY
Sbjct: 94  NNNYKKLQYYNINYIEQIPVPVPIPVPVYY 123


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 304 TNYYIFNSKHKDILLHSLIT*NPLPQF 384
           TNYY+F+    D++L  L   N L  F
Sbjct: 75  TNYYLFSLAISDLILLVLGLPNELSLF 101


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 414 LSKLSRTTLRNGNVGKLLVLSIYYEVYEARPVAESSRVY 530
           +S LS  T+ N N  K     +YY +     +     VY
Sbjct: 315 ISSLSNKTIHNNNNYKNYNKKLYYNIINIEQIPVPVPVY 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,875
Number of Sequences: 438
Number of extensions: 4521
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)