Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k08
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   1.6  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   2.7  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   3.6  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   4.7  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    25   8.3  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = -3

Query: 348 AFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 190
           ++ R + RS+GR ++      +   +  +PN+ N L+ V+  IP+N+ K KH+
Sbjct: 285 SYFREKVRSVGRLVRA-----ICILNHPIPNTDN-LDSVQIIIPQNQVKRKHD 331


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 24/101 (23%), Positives = 45/101 (44%)
 Frame = -3

Query: 339 RPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHNRITLLEDYTR 160
           RPQ R   + L   G   ++ + D V  ++++   +  AIP N  +A  N        T 
Sbjct: 525 RPQVRESVQYLMTGGVRVIMITGDSVVTAISIARSLGMAIPSNDEEAIRNYA-----LTG 579

Query: 159 EELMNVIGSTMTDRQIARMNSLRNAQ*KFLYVVKAFKALGD 37
            +L ++  S++ D     +   R      + +V+A ++LGD
Sbjct: 580 AQLDDLDSSSLRDAVSRVVVFARTTPQHKMKIVEALQSLGD 620


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 341 CARKNDRWAAA*NDW 297
           C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
 Frame = -3

Query: 339 RPQKRSLGRSLKRLGSNDVIFSSDYVPNS-----MNVLNKVKEAIPRNKFKAKHNR---- 187
           +P  ++L  + ++      + S++ +P S     +N  + ++E +P  K   K N     
Sbjct: 166 KPFVQALKLTFEKTLGQPAVTSTEKIPVSETTRNVNSQHLMRERVPGEKILPKSNERNIL 225

Query: 186 ITLLEDYTRE--ELMNVIGSTMTDRQIARMNSLRN 88
           IT    Y      L N++GST++    AR +  RN
Sbjct: 226 ITSALPYVNNVPHLGNIVGSTLSADVFARYHRARN 260


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 348 AFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNK 208
           AFL     SLG  +K+ G +   F+S  V ++M+ + +    IP  K
Sbjct: 221 AFLSNWSASLGEEVKKQGIDVWCFNSYLVVSAMSKVRRPTLTIPTPK 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,937
Number of Sequences: 5004
Number of extensions: 30738
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)