Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13k08
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0464 + 3597568-3600244,3600345-3600742 31 0.67
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549... 29 1.6
07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697... 29 2.7
02_05_0612 + 30348495-30348995,30349679-30350023 28 3.6
11_01_0605 + 4821363-4823246 28 4.7
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189... 28 4.7
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28... 28 4.7
04_01_0248 + 3254493-3254599,3258414-3258681,3260797-3261074,326... 27 6.3
11_01_0467 + 3621266-3621401,3621531-3622699,3622815-3623128,362... 27 8.3
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 30.7 bits (66), Expect = 0.67
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 408 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSM-NVLNKV 232
PS H+L V ++ N F+ + P +SL++L D F+ +P+S+ N+ N V
Sbjct: 384 PSGLTNLHNLVVIELSGNRFSGVLPDWLGALKSLQKLTVGDNNFTG-LIPSSLFNLTNLV 442
Query: 231 KEAIPRNKFKAK 196
+ NKF +
Sbjct: 443 HLFLYSNKFSGQ 454
>12_02_0942 -
24653834-24654046,24654346-24654482,24654626-24654959,
24655067-24655153,24655254-24655580
Length = 365
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -3
Query: 453 LANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFS 274
L ++M++++ + N C+S+ V D+ NN + RP + S + + D +
Sbjct: 280 LESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQCSDSNEITTTSTYDSVLV 339
Query: 273 SD 268
D
Sbjct: 340 DD 341
>07_03_0006 +
12268852-12269146,12269362-12269487,12269536-12269753,
12269918-12270292,12270376-12270610,12270698-12270861
Length = 470
Score = 28.7 bits (61), Expect = 2.7
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = -3
Query: 375 VCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPR------ 214
V D GNN F + P K L R ++ N + +V N++K AIP+
Sbjct: 285 VYDNGNNTFRTIFPSKVELQRMVEWGQVNTKFVKAKMEMKERDVGNEIKYAIPKIVDMKL 344
Query: 213 -NKFKAKHNRITLLEDYTREELMNVI 139
++ A H ++ +L+ E ++VI
Sbjct: 345 TKRYDAAHLQVLVLDHSLIPESVDVI 370
>02_05_0612 + 30348495-30348995,30349679-30350023
Length = 281
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 332 CGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRA 475
C R NA R W + +L +A+ + M A LA C+V R+
Sbjct: 231 CFRCNACKASALDTVRRNWRAVAVLNVAVLAILMLAYSLACCSVRDRS 278
>11_01_0605 + 4821363-4823246
Length = 627
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -3
Query: 408 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKV 232
PS+ L SL D+GNNE + P L+RL + + S VP+S+ L ++
Sbjct: 480 PSSISLLQSLITIDLGNNELIGIIPTNIGTFLKLERLDLSK-NYLSGQVPSSVANLERL 537
>10_08_0704 -
20018477-20018542,20018693-20018704,20018731-20018927,
20018928-20018999,20019159-20021289
Length = 825
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -3
Query: 408 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLG-RSLKRLGSNDVIFSSDYVPNSMNVLNKV 232
PS+ ++C +L D+GNN F P G SLK L F+ + +P+ ++ L+++
Sbjct: 577 PSSLEMCKALITLDIGNNRFFGGIPPWIGKGLLSLKFLSLKSNNFTGE-IPSELSNLSQL 635
Query: 231 K 229
+
Sbjct: 636 Q 636
>10_01_0021 -
281130-281224,281758-281842,281916-281971,282408-282584,
282686-282805,283004-283096,283548-283668,283772-283804,
284001-284082,286600-286739
Length = 333
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 219 PRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARM 103
P N + HNR ++L++ L N G T RQ+ M
Sbjct: 99 PPNAIQHLHNRQSMLQEVADLNLSNAYGEVCTPRQLVIM 137
>04_01_0248 +
3254493-3254599,3258414-3258681,3260797-3261074,
3261708-3261711,3263037-3263118,3263196-3263220,
3263498-3263599,3264123-3264306,3264902-3265068,
3265233-3265866
Length = 616
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 372 CDVGNNEFAFLRPQKRSLGRSLKRLGSND 286
C V F +L P + LGR K+LG D
Sbjct: 341 CSVLTPCFTYLNPTNKQLGRLFKKLGYGD 369
>11_01_0467 +
3621266-3621401,3621531-3622699,3622815-3623128,
3623276-3623937,3624040-3624401
Length = 880
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 408 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVK 229
PS H+L + + +N+F + P+ ++L++L D F ++P S++ L+++
Sbjct: 341 PSGIAKFHNLIILGLDHNQFTGVVPEWLGTLQALQKLSLLDNNFIG-FLPTSLSNLSQLS 399
Query: 228 EA-IPRNKF 205
E + NKF
Sbjct: 400 ELFLGSNKF 408
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,560,418
Number of Sequences: 37544
Number of extensions: 226988
Number of successful extensions: 716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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