Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k08
         (494 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC027993-1|AAH27993.1|  627|Homo sapiens CAPN9 protein protein.        29   8.9  
AY874864-1|AAW49735.1|  690|Homo sapiens calpain 9 protein.            29   8.9  
AL591291-2|CAI17215.1|  664|Homo sapiens calpain 9 protein.            29   8.9  
AL591291-1|CAI17214.1|  690|Homo sapiens calpain 9 protein.            29   8.9  
AL512328-3|CAI14866.1|  664|Homo sapiens calpain 9 protein.            29   8.9  
AL512328-2|CAI14865.1|  690|Homo sapiens calpain 9 protein.            29   8.9  
AF022799-1|AAB80762.1|  690|Homo sapiens digestive tract-specifi...    29   8.9  
AB038463-1|BAA92137.1|  664|Homo sapiens GC36 protein.                 29   8.9  

>BC027993-1|AAH27993.1|  627|Homo sapiens CAPN9 protein protein.
          Length = 627

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 405 SNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSN 289
           +NPQ+  SL   D G  E +FL    +   R LKR G+N
Sbjct: 313 TNPQIKLSLTEKDEGQEECSFLVALMQKDRRKLKRFGAN 351


>AY874864-1|AAW49735.1|  690|Homo sapiens calpain 9 protein.
          Length = 690

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 405 SNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSN 289
           +NPQ+  SL   D G  E +FL    +   R LKR G+N
Sbjct: 376 TNPQIKLSLTEKDEGQEECSFLVALMQKDRRKLKRFGAN 414


>AL591291-2|CAI17215.1|  664|Homo sapiens calpain 9 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 405 SNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSN 289
           +NPQ+  SL   D G  E +FL    +   R LKR G+N
Sbjct: 350 TNPQIKLSLTEKDEGQEECSFLVALMQKDRRKLKRFGAN 388


>AL591291-1|CAI17214.1|  690|Homo sapiens calpain 9 protein.
          Length = 690

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 405 SNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSN 289
           +NPQ+  SL   D G  E +FL    +   R LKR G+N
Sbjct: 376 TNPQIKLSLTEKDEGQEECSFLVALMQKDRRKLKRFGAN 414


>AL512328-3|CAI14866.1|  664|Homo sapiens calpain 9 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 405 SNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSN 289
           +NPQ+  SL   D G  E +FL    +   R LKR G+N
Sbjct: 350 TNPQIKLSLTEKDEGQEECSFLVALMQKDRRKLKRFGAN 388


>AL512328-2|CAI14865.1|  690|Homo sapiens calpain 9 protein.
          Length = 690

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 405 SNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSN 289
           +NPQ+  SL   D G  E +FL    +   R LKR G+N
Sbjct: 376 TNPQIKLSLTEKDEGQEECSFLVALMQKDRRKLKRFGAN 414


>AF022799-1|AAB80762.1|  690|Homo sapiens digestive tract-specific
           calpain protein.
          Length = 690

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 405 SNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSN 289
           +NPQ+  SL   D G  E +FL    +   R LKR G+N
Sbjct: 376 TNPQIKLSLTEKDEGQEECSFLVALMQKDRRKLKRFGAN 414


>AB038463-1|BAA92137.1|  664|Homo sapiens GC36 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 405 SNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSN 289
           +NPQ+  SL   D G  E +FL    +   R LKR G+N
Sbjct: 350 TNPQIKLSLTEKDEGQEECSFLVALMQKDRRKLKRFGAN 388


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,358,549
Number of Sequences: 237096
Number of extensions: 1194076
Number of successful extensions: 3006
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3006
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)