Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k08
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z78018-2|CAB01447.1|  434|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical
           protein C14B1.6 protein.
          Length = 793

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -3

Query: 213 NKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARMNSLRNAQ*KFLYVVKA----FKA 46
           N  + +     LL  YT EEL+ V G  + D QIA    +R        VVK      +A
Sbjct: 523 NYDQKRRQNFGLLRYYTLEELIEVFGLLLPDVQIAMRRGVRRENMPVSTVVKLKEKDREA 582

Query: 45  LGDPAKGAL 19
           +  P +G L
Sbjct: 583 VESPVQGVL 591


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 308 RLRPSDRFCGRRNANSLLPTSHTARLWHSCG 400
           RL+PS   CG RN   L P +  A ++ S G
Sbjct: 53  RLKPSSEECGLRNTQPLAPITDIAVIFPSLG 83


>Z78018-2|CAB01447.1|  434|Caenorhabditis elegans Hypothetical
           protein W07G4.2 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 27/87 (31%), Positives = 37/87 (42%)
 Frame = -3

Query: 477 NARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRL 298
           N R  T        ++   VI   S+   C   A   +GN+ F         LG S ++L
Sbjct: 45  NDRNSTTNTLTSYENVQNSVICNFSDIN-CRLAAGMRLGNHIFEMAA----LLGMS-RQL 98

Query: 297 GSNDVIFSSDYVPNSMNVLNKVKEAIP 217
               + F  D     +N+LNKVKEAIP
Sbjct: 99  HRKSLFFVED--KTYLNMLNKVKEAIP 123


>Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical
           protein R05D11.8 protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 378 AVCDVGNNEFAFLRPQKRSLGRSLKRLGSN-DVIFSSDYVPNSMNVLNKVKEAIP 217
           +V D   N    + PQK + GRS K+  +N + +F     P+ + +  K     P
Sbjct: 111 SVPDSSRNRSVAVSPQKSAKGRSPKKFATNVEKLFEHHSTPSKLTLAKKQSRQSP 165


>Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical
           protein F09F3.2 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 401 LLGLAITSCAMSAMRLASCAVSRRAFSXSC 490
           L+G+ IT+CA+SA+   + A+S  +    C
Sbjct: 131 LIGIPITTCAISAVLFITLAISVLSLIAGC 160


>Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical
           protein F20G4.2 protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 318 GRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAK 196
           G  LKR  S++ + SS Y PN   ++ K +    + K K K
Sbjct: 5   GPKLKRKESDEWLCSSTYQPNQEEIVQKNERNSTKKKKKLK 45


>U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical
           protein K11G9.5 protein.
          Length = 460

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 14  LRKAPLAGSPNALNALTTYKNFYCALRKLFMRAIC 118
           +R APL+ +   L ALT++ NF   L      AIC
Sbjct: 144 VRWAPLSETAIFLGALTSFTNFSSVLTNAVSGAIC 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,789
Number of Sequences: 27780
Number of extensions: 180887
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)