Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k08
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.58 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   5.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.2  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   7.2  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   7.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   7.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   7.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 217 AQQVQSQAQPHHVAGRLHARGANERDRLHYD 125
           +Q ++ Q +     G LH+  +   DRLHY+
Sbjct: 686 SQYIREQTESDDKEGYLHSVVSGALDRLHYE 716



 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 241  KQSKGSHTAQQVQSQ 197
            KQS  S+ +QQ+Q Q
Sbjct: 1050 KQSPSSNQSQQIQQQ 1064


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 66  HIKIFIARCANCSCA 110
           H  ++  RCANC+ A
Sbjct: 39  HSNVYQYRCANCTYA 53


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 238 QSKGSHTAQQVQSQAQPHH 182
           Q +  H AQ +    Q HH
Sbjct: 793 QQRHQHAAQMIYGHQQSHH 811



 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 282 IFSSDYVPNSMNVLNKVKEAIPRN 211
           +F S Y P  MN+L  + E   R+
Sbjct: 365 VFLSLYQPQGMNILGDLIEGTGRS 388


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 130  YDRPTNCAHEQ 98
            YD P NCA E+
Sbjct: 1807 YDDPANCAPEE 1817


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 309 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 226
           ++R G     IF  + + N +  +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 309 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 226
           ++R G     IF  + + N +  +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 309 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 226
           ++R G     IF  + + N +  +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 309 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 226
           ++R G     IF  + + N +  +NK+KE
Sbjct: 152 IRRTGEGSKPIFEREEIKNVLTKINKIKE 180


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 309 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 226
           ++R G     IF  + + N +  +NK+KE
Sbjct: 168 IRRTGEGSKPIFEREEIKNVLTKINKIKE 196


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 309 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 226
           ++R G     IF  + + N +  +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 309 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 226
           ++R G     IF  + + N +  +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 426 AQCPPCGWPAAPFXG 470
           A   PC W A P+ G
Sbjct: 296 ANTKPCTWAARPWQG 310


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 426 AQCPPCGWPAAPFXG 470
           A   PC W A P+ G
Sbjct: 296 ANTKPCTWAARPWQG 310


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 426 AQCPPCGWPAAPFXG 470
           A   PC W A P+ G
Sbjct: 296 ANTKPCTWAARPWQG 310


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 145 RDRLHYDRPTNCAHEQFAQRAIKI 74
           R +L YD  T+     ++ RAI I
Sbjct: 289 RSQLEYDLQTSIMSRHYSTRAIVI 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,103
Number of Sequences: 438
Number of extensions: 2196
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)