Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k03
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   0.33 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   0.44 
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   1.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    24   3.1  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   4.1  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    23   5.4  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    23   7.1  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    22   9.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    22   9.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    22   9.4  

>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 240 GLIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILCRR 115
           G+ + VL L         RDY+   N  +V+ K+C SIL R+
Sbjct: 145 GINVSVLTLNSNFYVPVYRDYLMALNINSVSKKSCVSILSRK 186


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 122  HKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINT 226
            HKML + L+ +  E   ++ S+  +L + SH+I T
Sbjct: 973  HKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRT 1007


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 183 DYIKGENSFNVAFKNCESILCRRISFQTVLMTCAVLLLLF 64
           +++  EN+F +A +N   I C  I F   + + ++L+  F
Sbjct: 91  NFLPFENTFEMALRNDFQIFCTSILFTCYIQSFSLLISNF 130


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -1

Query: 204 CCKKELRDYIKGENSFNVAF---KNCESI 127
           CC K ++D++ G N+ ++ +   KN E I
Sbjct: 558 CCLKNVKDFVCGANTISMQWNLQKNMEFI 586


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 216 LCDECCKKELRDYIKGENSFN 154
           +C+ C KK+L D+    + F+
Sbjct: 17  ICESCLKKQLYDFYHKRDEFS 37


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = -1

Query: 129 ILCRRISFQTV 97
           +LCRRISF+T+
Sbjct: 69  VLCRRISFRTL 79


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 50  NFSTLNNNNKTAQVISTV*KLMRRHKMLSQFL 145
           N ST+N  +K+   I    +  R H M+S+FL
Sbjct: 370 NVSTVNPFSKSLYDIGLHAETDREHTMISEFL 401


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 198 KKELRDYIKGENSFNVAFK 142
           +KE +D +   +SFNV +K
Sbjct: 73  RKETKDSLNTNSSFNVLYK 91


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 115 HQFSNGADDLRRFVVVIQ 62
           H+++N  + LRR +V+IQ
Sbjct: 293 HEYANICESLRRALVLIQ 310


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 213  CDECCKKELRDYIKGEN 163
            CD  C +   DYI  EN
Sbjct: 1087 CDRICYRGSPDYISAEN 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,545
Number of Sequences: 5004
Number of extensions: 12885
Number of successful extensions: 38
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)