Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k03
         (240 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97144-1|AAC51646.1|  460|Homo sapiens RET ligand 1 protein.           28   4.6  
U95847-1|AAB71811.1|  460|Homo sapiens GDNF receptor alpha protein.    28   4.6  
BC014962-1|AAH14962.1|  460|Homo sapiens GDNF family receptor al...    28   4.6  
AF058999-1|AAC14431.1|  465|Homo sapiens glial cell line-derived...    28   4.6  
AF042080-1|AAB97371.1|  465|Homo sapiens glial cell line-derived...    28   4.6  
AF038421-1|AAC39692.1|  465|Homo sapiens GPI-linked anchor prote...    28   4.6  
AF038420-1|AAC39693.1|  465|Homo sapiens GPI-linked anchor prote...    28   4.6  

>U97144-1|AAC51646.1|  460|Homo sapiens RET ligand 1 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 201 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 82
           C K LR   D +  ++S+ + F +C  I C     QT++  C+
Sbjct: 187 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 229


>U95847-1|AAB71811.1|  460|Homo sapiens GDNF receptor alpha protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 201 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 82
           C K LR   D +  ++S+ + F +C  I C     QT++  C+
Sbjct: 187 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 229


>BC014962-1|AAH14962.1|  460|Homo sapiens GDNF family receptor alpha
           1 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 201 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 82
           C K LR   D +  ++S+ + F +C  I C     QT++  C+
Sbjct: 187 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 229


>AF058999-1|AAC14431.1|  465|Homo sapiens glial cell line-derived
           neurotrophic factor receptor alpha protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 201 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 82
           C K LR   D +  ++S+ + F +C  I C     QT++  C+
Sbjct: 192 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 234


>AF042080-1|AAB97371.1|  465|Homo sapiens glial cell line-derived
           neurotrophic factor receptor alpha protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 201 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 82
           C K LR   D +  ++S+ + F +C  I C     QT++  C+
Sbjct: 192 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 234


>AF038421-1|AAC39692.1|  465|Homo sapiens GPI-linked anchor protein
           protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 201 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 82
           C K LR   D +  ++S+ + F +C  I C     QT++  C+
Sbjct: 192 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 234


>AF038420-1|AAC39693.1|  465|Homo sapiens GPI-linked anchor protein
           protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 201 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 82
           C K LR   D +  ++S+ + F +C  I C     QT++  C+
Sbjct: 192 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 234


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,248,523
Number of Sequences: 237096
Number of extensions: 372823
Number of successful extensions: 792
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 76,859,062
effective HSP length: 58
effective length of database: 63,107,494
effective search space used: 1325257374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)