Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13k03
(240 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73969-8|CAA98239.1| 351|Caenorhabditis elegans Hypothetical pr... 29 0.44
AC006604-1|AAF39751.1| 484|Caenorhabditis elegans Hypothetical ... 29 0.58
U39999-10|AAA81108.2| 306|Caenorhabditis elegans Serpentine rec... 28 1.0
AC006714-12|AAK29719.2| 305|Caenorhabditis elegans F-box a prot... 27 2.3
AL117202-1|CAB55091.2| 454|Caenorhabditis elegans Hypothetical ... 26 3.1
AF067942-7|AAG45571.2| 200|Caenorhabditis elegans Hypothetical ... 26 3.1
AF016682-11|AAB66190.2| 270|Caenorhabditis elegans Hypothetical... 26 3.1
U88308-3|AAB42329.2| 430|Caenorhabditis elegans Resistance to i... 26 4.1
AF077546-2|AAC26313.2| 293|Caenorhabditis elegans Hypothetical ... 26 4.1
Z82269-5|CAH60772.1| 618|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z82269-4|CAB70200.2| 633|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z68014-1|CAA92023.1| 335|Caenorhabditis elegans Hypothetical pr... 25 7.2
AL021487-15|CAH60766.1| 618|Caenorhabditis elegans Hypothetical... 25 7.2
AL021487-14|CAA16360.3| 633|Caenorhabditis elegans Hypothetical... 25 7.2
>Z73969-8|CAA98239.1| 351|Caenorhabditis elegans Hypothetical
protein C12D8.12 protein.
Length = 351
Score = 29.1 bits (62), Expect = 0.44
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = -1
Query: 225 VLILCDECCKKELRDYIKGENSFNVAFKNCESILCRRISFQTVLMTCAVLLLLFNVEKFS 46
+ I +C + R + G N +++ K ++ L R + FQT++ + + LF + F
Sbjct: 214 IFIFGFKCYYEMTRVVVPGRN-YSITQKLLQTQLFRALVFQTLIPLIIMYIPLFILFLFP 272
Query: 45 MINLVDNFVNFI 10
M+N+ F +++
Sbjct: 273 MLNIDLGFAHYV 284
>AC006604-1|AAF39751.1| 484|Caenorhabditis elegans Hypothetical
protein C07F11.2 protein.
Length = 484
Score = 28.7 bits (61), Expect = 0.58
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 165 NSFNVAFKNCESILCRRISFQTVLMTCAVLLLLFNVEKFSM 43
N V + CE LC ++ + + TC +L LLFN F++
Sbjct: 364 NDLPVLKRACERYLCSELNSKKDIGTCLLLDLLFNSIVFNL 404
>U39999-10|AAA81108.2| 306|Caenorhabditis elegans Serpentine
receptor, class x protein95 protein.
Length = 306
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -1
Query: 180 YIKGENSFNVAFKNCESILCRRISFQTVLMTCAVLLLLFNVEKFSMINLVDNFVNFIIA 4
YI F + F+ I +F +L TC+++ F+ NLV N+VN +++
Sbjct: 36 YIASGFMFGIKFRGGFFIFSISKAFSNIL-TCSLVFFWLVPAVFARDNLVSNYVNMLLS 93
>AC006714-12|AAK29719.2| 305|Caenorhabditis elegans F-box a protein
protein 63 protein.
Length = 305
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = -1
Query: 165 NSFNVAFKNCESILCRRISFQTVLMTCAVLLLLFNVEKFSMINLVDNFVNFIIA 4
NS V+++N IL + +F +++ + ++L +VEK ++N D NFI A
Sbjct: 87 NSTAVSYQN-RKILIKGENFMKIMLK-DLKIILKHVEKLEIVNQEDIISNFIEA 138
>AL117202-1|CAB55091.2| 454|Caenorhabditis elegans Hypothetical
protein Y47D3A.1 protein.
Length = 454
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -1
Query: 213 CDECCKKELRDYIKGENSFNVAFKNCESILCRRISFQTVLMTCAVLLLLFNVEKFSMINL 34
C EC K + G ++ +S++ ++ SF + +T L +L + K L
Sbjct: 164 CGECRKMIQNCKVYGPIQLDIF----QSVMGQKRSFDALQITDEDLYVLLWLNKQKDPKL 219
Query: 33 VDNFVNFII 7
V+NF+N II
Sbjct: 220 VENFINSII 228
>AF067942-7|AAG45571.2| 200|Caenorhabditis elegans Hypothetical
protein ZK6.3 protein.
Length = 200
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 213 CDECCKKELRDYIKGENSFNVAFKN 139
C + ++ L+ +IKGEN + V F N
Sbjct: 75 CQQLKERYLKKFIKGENLYRVYFYN 99
>AF016682-11|AAB66190.2| 270|Caenorhabditis elegans Hypothetical
protein T07D3.1 protein.
Length = 270
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 192 ELRDYIKGENSFNVAFKNCESILCRRIS 109
+LRD I+G +F A CE + RR++
Sbjct: 217 KLRDMIEGSTNFESAVLTCEGMNKRRVA 244
>U88308-3|AAB42329.2| 430|Caenorhabditis elegans Resistance to
inhibitors of cholinesteraseprotein 19 protein.
Length = 430
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 96 LMTCAVLLLLFNVEKFSMINLVDNFVNFII 7
L TC L + F ++N VDN+ NF++
Sbjct: 61 LDTCLNLYRSVHGTSFQLLNNVDNYANFLL 90
>AF077546-2|AAC26313.2| 293|Caenorhabditis elegans Hypothetical
protein T08E11.7 protein.
Length = 293
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 171 GENSFNVAFKNCESILCRRISFQTVLMTCAVLLLL 67
GEN ++AFK+ E +L IS + M V LLL
Sbjct: 94 GENFISIAFKDLELLLKNSISTLELFMPEHVPLLL 128
>Z82269-5|CAH60772.1| 618|Caenorhabditis elegans Hypothetical
protein Y45F10B.13b protein.
Length = 618
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 73 QQNGASHQHRLKTDAPTQNAFAIFKGHIK 159
QQNG H+ PT N + F H++
Sbjct: 57 QQNGVRHRKNPPPMPPTNNNTSTFNNHVQ 85
>Z82269-4|CAB70200.2| 633|Caenorhabditis elegans Hypothetical
protein Y45F10B.13a protein.
Length = 633
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 73 QQNGASHQHRLKTDAPTQNAFAIFKGHIK 159
QQNG H+ PT N + F H++
Sbjct: 57 QQNGVRHRKNPPPMPPTNNNTSTFNNHVQ 85
>Z68014-1|CAA92023.1| 335|Caenorhabditis elegans Hypothetical
protein W04G3.1 protein.
Length = 335
Score = 25.0 bits (52), Expect = 7.2
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -2
Query: 191 NCVIISKVKIRLMWPLKIAKAFCV 120
N ++++ V +++MW +A FC+
Sbjct: 36 NILVVTGVFLKIMWSRNVALVFCL 59
>AL021487-15|CAH60766.1| 618|Caenorhabditis elegans Hypothetical
protein Y45F10B.13b protein.
Length = 618
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 73 QQNGASHQHRLKTDAPTQNAFAIFKGHIK 159
QQNG H+ PT N + F H++
Sbjct: 57 QQNGVRHRKNPPPMPPTNNNTSTFNNHVQ 85
>AL021487-14|CAA16360.3| 633|Caenorhabditis elegans Hypothetical
protein Y45F10B.13a protein.
Length = 633
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 73 QQNGASHQHRLKTDAPTQNAFAIFKGHIK 159
QQNG H+ PT N + F H++
Sbjct: 57 QQNGVRHRKNPPPMPPTNNNTSTFNNHVQ 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,731,162
Number of Sequences: 27780
Number of extensions: 75798
Number of successful extensions: 206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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