Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k03
         (240 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   0.91 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   4.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   6.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    19   8.5  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 0.91
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 14  KLTKLSTRLIMENFSTLNNNNK-TAQVISTV*KLMRRHKMLSQFLK--ATLNEFSP 172
           K  +L    I++NF+ L+ NN    Q I  V +L+     + Q +   +T++E +P
Sbjct: 57  KKVQLYCECILKNFNILDKNNVFKPQGIKAVMELLIDENSVKQLVSDCSTISEENP 112


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 219 ILCDECCKKELRDYIKGENSFNVAFKNCES 130
           I+C   CK+      +G +   +A +N  S
Sbjct: 76  IICKCFCKRRTNTLRRGSDGSQLAMRNDRS 105


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 219 ILCDECCKKELRDYIKGENSFNVAFKNCES 130
           I+C   CK+      +G +   +A +N  S
Sbjct: 524 IICKCFCKRRTNTLRRGSDGSQLAMRNDRS 553


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 79  NGASHQHRLKTD 114
           NG SH+ RL  D
Sbjct: 19  NGGSHEKRLLND 30


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 138 CESILCRRISFQTVLMT 88
           CE + C R S  T + T
Sbjct: 41  CERVYCSRNSLMTHIYT 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,291
Number of Sequences: 438
Number of extensions: 863
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)