Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13k01
         (805 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.       25   2.1  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   4.8  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   4.8  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   6.3  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   8.3  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    23   8.3  

>DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.
          Length = 403

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 250 LGQERHFRKRKMRFEDDMEVLYDGV 176
           +G +  FR R++RF DD +   DGV
Sbjct: 311 IGLDALFRLRELRFFDDHDSALDGV 335


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 2/187 (1%)
 Frame = -1

Query: 766  TTTYLIAIGTAIKFYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNAL 587
            TT  + A  TA+K     +I  HK+K       L A +  +  LLK    L  + K    
Sbjct: 858  TTDEMTAAVTALK----QQIKQHKEKMNSQSKELKAKYHQRDKLLKQNDELKLEIKKKEN 913

Query: 586  LHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDA 407
               +   E  D  D+I  + +    +  + E F V     KN    R++  +    E   
Sbjct: 914  EITKVRNENKDGYDRISGMEQKYPWIPEDKEFFGV-----KN---TRYDYNKEDPQEAGR 965

Query: 406  KLNMLQ-SAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERI-DDRIKLAFVLGQERH 233
            KL  LQ S +K+   +   ++   V   R+  +++ +    + + DD+ K+  ++     
Sbjct: 966  KLKKLQDSKDKMSRNV---NQKAMVLLEREEEQYKEVMRRKKVVEDDKKKIQAIITDLDE 1022

Query: 232  FRKRKMR 212
             +K+K++
Sbjct: 1023 EKKKKLK 1029


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -1

Query: 571 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 392
           E E+++   + E ++ H+K      E+          DVG   E+     +ELD     L
Sbjct: 435 ESEKNEALKRQEKLIDHIKTSRLGLEEQKRIKAELSQDVGTSKERIHELQSELDNVREQL 494

Query: 391 QSAE 380
             A+
Sbjct: 495 GDAK 498


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 384 ADCSMLSLASSSFKRNSNCSNLLPTS 461
           + CS LS ASS+   +S   +L PTS
Sbjct: 236 SSCSPLSTASSASCSSSAAGSLCPTS 261


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 687 PNAISTRWAHC 655
           PNA +T W+HC
Sbjct: 185 PNATNTVWSHC 195


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 687 PNAISTRWAHC 655
           PNA +T W+HC
Sbjct: 185 PNATNTVWSHC 195


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 849,662
Number of Sequences: 2352
Number of extensions: 16403
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84823812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)