Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13j22
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 71 1e-13
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 40 2e-04
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 40 2e-04
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 34 0.009
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 34 0.012
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 31 0.066
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 31 0.088
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 31 0.12
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 28 0.62
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 27 1.1
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 27 1.9
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 27 1.9
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 2.5
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 7.6
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 7.6
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 70.5 bits (165), Expect = 1e-13
Identities = 33/63 (52%), Positives = 46/63 (73%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGN 69
+DKCIGS + +IMK+++E GTL GFDD+VN++L DVTEY+ T G ++LLNGN
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG-VTEKHSEMLLNGN 68
Query: 68 NIC 60
+C
Sbjct: 69 GMC 71
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 39.5 bits (88), Expect = 2e-04
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = -3
Query: 224 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
I + + D + G ++GFD+F+N++LDD + ++ R+ L +ILL G+NI
Sbjct: 28 IWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKRE---LGRILLKGDNI 78
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 39.5 bits (88), Expect = 2e-04
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -3
Query: 227 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKIT 99
RI +++ G L+GFD +N++LDDV E PE K+T
Sbjct: 35 RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLT 77
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 34.3 bits (75), Expect = 0.009
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -3
Query: 233 GSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
G I + +KN + G L+ D+++N+ L +V + P+G K L + + GNNI
Sbjct: 12 GRPILVELKNGETFNGHLENCDNYMNLTLREVIR--TMPDGDKFFRLPECYIRGNNI 66
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 33.9 bits (74), Expect = 0.012
Identities = 14/60 (23%), Positives = 35/60 (58%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ + + +++ G L+G+D F+N++L+D E +G K+ + + + GN++
Sbjct: 11 KYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLED--SIEEKVDGEKV-KIGSVAIRGNSV 67
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 31.5 bits (68), Expect = 0.066
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 224 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 129
+++ K+ + VG L FD F+N++L D EY
Sbjct: 14 LNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEY 45
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 31.1 bits (67), Expect = 0.088
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 132
+ ++ +++++ K+++G L+ FD F N++L E
Sbjct: 20 VDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIE 54
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 30.7 bits (66), Expect = 0.12
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -3
Query: 224 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 132
+++ ++ D+E+ G L +D+ +NM+L D E
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 28.3 bits (60), Expect = 0.62
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYEST 120
I + + + +KND + G L+ D F+N+ L++++ +++
Sbjct: 11 IDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDAS 49
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = -3
Query: 227 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 105
++ I +N+K+++ ++ FD NM+L++V TE + T G+K
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKK 86
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 357 QVDCHYSK*IPRNLRTQKKNDAKFITES 274
Q +CHYSK + R+ KK + + ES
Sbjct: 35 QEECHYSKRLKRSYSATKKKNGNPVLES 62
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 297 HFFSAYEDFVEFIYCNDNQLVDYLIS*SIVL 389
+ FS E + + C DNQ YLIS + VL
Sbjct: 126 NLFSIIEQYDVVLDCTDNQYTRYLISDTCVL 156
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.5
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRK 105
IGSRI +I K+D VG LQ + + L + T EGRK
Sbjct: 5 IGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGT-EGRK 47
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 7.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 351 DCHYSK*IPRNLRTQKKNDAKF 286
DC+ SK IP+N ND+ +
Sbjct: 274 DCYSSKNIPKNTEALPNNDSSY 295
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQG--FDDFVNMLLDDVTEY 129
IG+ I + K+ + V L+ F N+L++DVTE+
Sbjct: 616 IGALIRSLSKSGPQTVSQLENALLPVFQNVLIEDVTEF 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,683
Number of Sequences: 5004
Number of extensions: 40495
Number of successful extensions: 89
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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