Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13j22
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 102 1e-22
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 40 0.001
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 40 0.001
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 38 0.005
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 36 0.022
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 34 0.066
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 33 0.087
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 33 0.15
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 31 0.35
07_01_0479 + 3606663-3607448 31 0.46
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 31 0.61
10_08_0852 + 21073620-21074279,21074323-21074748 29 2.5
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206... 28 3.3
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068 28 3.3
10_07_0048 - 12354566-12354639,12355563-12355665,12355781-123559... 28 4.3
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 27 5.7
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 102 bits (245), Expect = 1e-22
Identities = 47/65 (72%), Positives = 56/65 (86%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGN 69
+D+CIGS+I +IMK DKE+VGTL GFD +VNM+L+DVTEYE T EGR+IT LDQILLNGN
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGN 143
Query: 68 NICDV 54
NI V
Sbjct: 144 NIAIV 148
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = -3
Query: 227 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
+I + + D + G + GFD+++N++LDD E + RK L +ILL G+NI
Sbjct: 19 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRK--SLGRILLKGDNI 71
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/65 (27%), Positives = 38/65 (58%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ I + ++ +VGTL+GFD F+N+++D+ E G T + +++ GN++
Sbjct: 12 KYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVVRGNSV 67
Query: 62 CDVGA 48
+ A
Sbjct: 68 VMIEA 72
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 37.5 bits (83), Expect = 0.005
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 114
+ RI++ +++D+E+ G L +D +NM+L DV E +T E
Sbjct: 27 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 67
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 35.5 bits (78), Expect = 0.022
Identities = 15/61 (24%), Positives = 36/61 (59%)
Frame = -3
Query: 230 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNICDVG 51
S + + + ++ ++GTL+GFD F+N+++D+ E G + + +++ GN++ +
Sbjct: 30 SILPVKLNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNEKNDIGMVVIRGNSVVMIE 85
Query: 50 A 48
A
Sbjct: 86 A 86
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 33.9 bits (74), Expect = 0.066
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = -3
Query: 179 QGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
+GFD+++N++LD+ E + RK L +ILL G+NI
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRK--SLGRILLKGDNI 133
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 33.5 bits (73), Expect = 0.087
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Frame = -3
Query: 239 CIGS-RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 105
C+G ++ I +N+K+++G ++ FD NM+L++V TE T +G+K
Sbjct: 378 CLGDIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKK 427
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 132
++ + I +I + + +VGTL+GFD N++LD+ E
Sbjct: 8 LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 31.5 bits (68), Expect = 0.35
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -3
Query: 200 KEMVGTLQGFDDFVNMLLDDVTEYE 126
+ + GTL+G+D +N++LD+ E+E
Sbjct: 34 QSVTGTLKGYDQLLNLVLDEAVEFE 58
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.1 bits (67), Expect = 0.46
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGR 108
+ R+ + +++ +++VG FD +N++L D E+ P +
Sbjct: 13 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 55
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 30.7 bits (66), Expect = 0.61
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = -3
Query: 230 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 105
+++ I +N+K+++G ++ FD NM+L++V TE T +G+K
Sbjct: 32 TQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 77
>10_08_0852 + 21073620-21074279,21074323-21074748
Length = 361
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 108 KNNXVGSNSIKWQ*HMRCWCPVVKCPGESIAM 13
++N V + W R W P+ CPGE + +
Sbjct: 241 RHNRVALYKLNWD--ARAWLPIAACPGERVLL 270
>11_01_0277 +
2060328-2061061,2061360-2061420,2061560-2061679,
2061947-2062112,2062229-2062635
Length = 495
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 198 RNGWNSTRIR*FCKHVTXRCYRIRIDTRR 112
R GW + RIR C H + IR+D ++
Sbjct: 230 RLGWATDRIRILCLHTNQSMHSIRLDKKK 258
>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
Length = 67
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD 141
+G + + +KND + GTL D ++N+ L++
Sbjct: 11 VGKEVTVELKNDLAIRGTLHSVDQYLNIKLEN 42
>10_07_0048 -
12354566-12354639,12355563-12355665,12355781-12355933,
12356105-12356132,12356414-12356450,12356563-12356746
Length = 192
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -3
Query: 227 RIH-IIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRK 105
+IH +I + DK+ GT+ FD+FV+M+ D + E ++ E K
Sbjct: 84 QIHQMIAEVDKDGSGTID-FDEFVHMMTDKMGERDAREELNK 124
>04_04_0706 +
27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKI 102
++KCI + + ND E + +D N LLDD+ + T G+ I
Sbjct: 742 LEKCITELVKHVFNNDTEALNARILINDGGNTLLDDLFLFFITSPGKII 790
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,721
Number of Sequences: 37544
Number of extensions: 222477
Number of successful extensions: 481
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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