Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13j22
(469 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 116 5e-26
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 116 5e-26
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 116 5e-26
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 40 0.004
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 40 0.004
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 40 0.004
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 40 0.004
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 40 0.004
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 40 0.004
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 40 0.004
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 40 0.004
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 40 0.004
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 39 0.007
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 39 0.007
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 39 0.007
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 39 0.007
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 39 0.007
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 39 0.007
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 39 0.007
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 38 0.023
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 33 0.37
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 33 0.37
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 33 0.37
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 33 0.37
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 33 0.37
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 33 0.37
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 33 0.37
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 33 0.37
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 33 0.37
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 32 0.86
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 32 1.1
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 32 1.1
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 32 1.1
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 32 1.1
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 32 1.1
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 32 1.1
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 32 1.1
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 32 1.1
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 32 1.1
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 31 1.5
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 31 2.0
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 31 2.0
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 31 2.0
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 31 2.0
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 31 2.0
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 31 2.0
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 31 2.0
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 31 2.0
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 31 2.0
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 31 2.0
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 31 2.0
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 31 2.0
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 29 6.1
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 29 6.1
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 29 6.1
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 29 6.1
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 29 6.1
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 29 6.1
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 29 6.1
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 29 6.1
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 29 6.1
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 29 6.1
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 29 6.1
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 29 6.1
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 29 6.1
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 29 6.1
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 29 6.1
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 29 6.1
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 29 6.1
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 116 bits (278), Expect = 5e-26
Identities = 52/62 (83%), Positives = 59/62 (95%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGN 69
VDKCIGSRIHI+MK+DKE+VGTL GFDDFVNM+L+DVTE+E TPEGR+IT LDQILLNGN
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGN 77
Query: 68 NI 63
NI
Sbjct: 78 NI 79
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 116 bits (278), Expect = 5e-26
Identities = 52/62 (83%), Positives = 59/62 (95%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGN 69
VDKCIGSRIHI+MK+DKE+VGTL GFDDFVNM+L+DVTE+E TPEGR+IT LDQILLNGN
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGN 77
Query: 68 NI 63
NI
Sbjct: 78 NI 79
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 116 bits (278), Expect = 5e-26
Identities = 52/62 (83%), Positives = 59/62 (95%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGN 69
VDKCIGSRIHI+MK+DKE+VGTL GFDDFVNM+L+DVTE+E TPEGR+IT LDQILLNGN
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGN 77
Query: 68 NI 63
NI
Sbjct: 78 NI 79
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 39.9 bits (89), Expect = 0.004
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 114
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITXLDQILLNG 72
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 71 NNICDVG 51
+N+ +G
Sbjct: 65 DNVAVIG 71
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 39.9 bits (89), Expect = 0.004
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 114
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITXLDQILLNG 72
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 71 NNICDVG 51
+N+ +G
Sbjct: 65 DNVAVIG 71
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 39.9 bits (89), Expect = 0.004
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 114
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 39.9 bits (89), Expect = 0.004
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 114
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITXLDQILLNG 72
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 71 NNICDVG 51
+N+ +G
Sbjct: 65 DNVAVIG 71
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 39.9 bits (89), Expect = 0.004
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 114
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITXLDQILLNG 72
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 71 NNICDVG 51
+N+ +G
Sbjct: 65 DNVAVIG 71
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -3
Query: 230 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
SRI + + M G + GFD+++N++LDD E S + RK L +I+L G+NI
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNI 84
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -3
Query: 230 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
SRI + + M G + GFD+++N++LDD E S + RK L +I+L G+NI
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNI 84
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -3
Query: 230 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
SRI + + M G + GFD+++N++LDD E S + RK L +I+L G+NI
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNI 84
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 39.1 bits (87), Expect = 0.007
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -3
Query: 230 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
SRI + + M G + GFD+++N++LDD E S + RK L +I+L G+NI
Sbjct: 18 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNI 73
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -3
Query: 230 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
SRI + + M G + GFD+++N++LDD E S + RK L +I+L G+NI
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNI 84
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -3
Query: 230 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
SRI + + M G + GFD+++N++LDD E S + RK L +I+L G+NI
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNI 84
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = -3
Query: 197 EMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
++ G + GFD+++N++LDD E S + RK L +I+L G+NI
Sbjct: 42 QIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNI 84
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 37.5 bits (83), Expect = 0.023
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = -3
Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITXLDQILLNG 72
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 71 NNI 63
+N+
Sbjct: 65 DNV 67
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 33.5 bits (73), Expect = 0.37
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 33.5 bits (73), Expect = 0.37
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 33.5 bits (73), Expect = 0.37
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 33.5 bits (73), Expect = 0.37
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 33.5 bits (73), Expect = 0.37
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 33.5 bits (73), Expect = 0.37
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 33.5 bits (73), Expect = 0.37
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 33.5 bits (73), Expect = 0.37
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 33.5 bits (73), Expect = 0.37
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -3
Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 32.3 bits (70), Expect = 0.86
Identities = 13/55 (23%), Positives = 32/55 (58%)
Frame = -3
Query: 227 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 4 KLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 55
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITXLDQILL 78
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITXLDQILL 78
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITXLDQILL 78
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITXLDQILL 78
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITXLDQILL 78
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITXLDQILL 78
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITXLDQILL 78
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITXLDQILL 78
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITXLDQILL 78
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 31.5 bits (68), Expect = 1.5
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITXLDQILL 78
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 117
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 230 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRK 105
+++ I +N+K+++G ++ FD NM+L++V E + P+ K
Sbjct: 40 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGK 82
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 6 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 65
Query: 77 NGNNI 63
G N+
Sbjct: 66 RGENL 70
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 6 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 65
Query: 77 NGNNI 63
G N+
Sbjct: 66 RGENL 70
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 230 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRK 105
+++ I +N+K+++G ++ FD NM+L++V E + P+ K
Sbjct: 40 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGK 82
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 230 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRK 105
+++ I +N+K+++G ++ FD NM+L++V E + P+ K
Sbjct: 40 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGK 82
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITXLDQ------ILL 78
I R+ I+++ + +GT + FD +N++L D E+ P+ K ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 77 NGNNI 63
G N+
Sbjct: 73 RGENL 77
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 230 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRK 105
+++ I +N+K+++G ++ FD NM+L++V E + P+ K
Sbjct: 40 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGK 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,433,180
Number of Sequences: 237096
Number of extensions: 1295402
Number of successful extensions: 1950
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 1913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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