Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j22
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...   101   3e-22
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    40   0.001
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    37   0.006
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    37   0.006
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    37   0.006
Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical p...    35   0.025
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    34   0.044
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    34   0.058
AF125954-2|AAK68175.1|  193|Caenorhabditis elegans Hypothetical ...    32   0.18 
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    30   0.72 
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    30   0.95 
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AL590343-3|CAC35864.1|   95|Caenorhabditis elegans Hypothetical ...    27   5.1  
AL032622-2|CAA21498.1|   95|Caenorhabditis elegans Y66A7A.3 prot...    27   5.1  
Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AC006769-3|AAX22281.1|  196|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score =  101 bits (241), Expect = 3e-22
 Identities = 43/62 (69%), Positives = 56/62 (90%)
 Frame = -3

Query: 248 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGN 69
           +DKCIGS+I +IMKNDKE+VGTL GFDD+VNM+L+DV EYE+T +G+++T LD ILLNGN
Sbjct: 18  IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77

Query: 68  NI 63
           +I
Sbjct: 78  HI 79


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/41 (39%), Positives = 28/41 (68%)
 Frame = -3

Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 114
           +  R+++ M+ND+E+ G L+ FD  +NM+L +V E  +T E
Sbjct: 25  LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE 65


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKI 102
           +   I +  +  +E  G L+GFD  +NM+LDD  EY   P+   +
Sbjct: 20  LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSV 64


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 16/60 (26%), Positives = 35/60 (58%)
 Frame = -3

Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
           K +   + + +  ++ + G L+GFD F+NM++D+  EY+   +G  +  L   ++ GN++
Sbjct: 11  KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK--DGGSVN-LGMTVIRGNSV 67


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 16/60 (26%), Positives = 35/60 (58%)
 Frame = -3

Query: 242 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
           K +   + + +  ++ + G L+GFD F+NM++D+  EY+   +G  +  L   ++ GN++
Sbjct: 11  KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK--DGGSVN-LGMTVIRGNSV 67


>Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical
           protein Y49E10.15 protein.
          Length = 90

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -3

Query: 230 SRIHIIMKND--KEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
           +R+ I +  D    + G + GFD+F+N++ D+  E     +GR    + +ILL G+NI
Sbjct: 25  TRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGR--NKIGRILLKGDNI 80


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 34.3 bits (75), Expect = 0.044
 Identities = 13/58 (22%), Positives = 33/58 (56%)
 Frame = -3

Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
           +  ++ +++++ ++++G L+  D F N++L+DV E     +    T    +L+ G N+
Sbjct: 18  LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGENV 75


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 33.9 bits (74), Expect = 0.058
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 236 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVT 135
           +G  + + +KND  + GTL   D ++NM L D+T
Sbjct: 11  VGKDVVVELKNDLSICGTLHSVDQYLNMKLTDIT 44


>AF125954-2|AAK68175.1|  193|Caenorhabditis elegans Hypothetical
           protein C13B7.6 protein.
          Length = 193

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -1

Query: 328 STKSSYAEKK*RKVHYRIQTRYCLWNLLTNALVPAFIS**KTTKKWLEL 182
           S  +S  EK  +KVH +I  R C   +L  +LVP  I   K+ KK L+L
Sbjct: 125 SVTNSAPEKIQKKVHVKIMPRKCAPQILRRSLVPPPILTPKSAKKKLKL 173


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
 Frame = -3

Query: 227 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 105
           ++ I  +N+K+++G ++ FD   NM+L++V    TE   T +G+K
Sbjct: 41  QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKK 85


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -3

Query: 224 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITXLDQILLNGNNI 63
           ++I +KN  ++ GT+ G D  +N  L  V+    T + ++   LD + + GNNI
Sbjct: 15  VNIELKNGTQVSGTIMGVDVAMNTHLRAVS---MTVKNKEPVKLDTLSIRGNNI 65


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 154  MFTKSSNPCRVPTISLSF--FIMI*MREPMHLSTSSRGSNVFGFGNELC 294
            + TKS +  R   I + F  F++        LST  RG+ V+G G +LC
Sbjct: 858  LMTKSLHAPRKFGIFMKFQKFLVDFQNYDRSLSTPQRGATVYGSGEQLC 906


>AL590343-3|CAC35864.1|   95|Caenorhabditis elegans Hypothetical
           protein Y66A7A.3 protein.
          Length = 95

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 231 FPHSYHNEKRQRNGWNSTRIR*FCKHVTXRCYRIRIDTRR 112
           F   Y  +KRQ +G N + I  F +HV   C  + + T++
Sbjct: 12  FVLKYSKKKRQNSGINISEICKFFEHVPLSCAALGLATKK 51


>AL032622-2|CAA21498.1|   95|Caenorhabditis elegans Y66A7A.3
           protein.
          Length = 95

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 231 FPHSYHNEKRQRNGWNSTRIR*FCKHVTXRCYRIRIDTRR 112
           F   Y  +KRQ +G N + I  F +HV   C  + + T++
Sbjct: 12  FVLKYSKKKRQNSGINISEICKFFEHVPLSCAALGLATKK 51


>Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical
           protein T24C2.4 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 185 TLQGFDDFVNMLLD-DVTEYESTPEG 111
           TL GFDD+V ++LD    EY    EG
Sbjct: 69  TLNGFDDYVKLVLDGKCLEYTDMYEG 94


>AC006769-3|AAX22281.1|  196|Caenorhabditis elegans Hypothetical
           protein Y45G12C.16 protein.
          Length = 196

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -1

Query: 328 STKSSYAEKK*RKVHYRIQTRYCLW---NLLTNALVPAFIS**KTTKKWLEL 182
           S  +S  EK  +KVH +I  R C      +L  +LVP  I   K+ KK L+L
Sbjct: 125 SVTNSAPEKIQKKVHVKIMPRKCKTGAPQILRRSLVPPPILTPKSAKKKLKL 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,233,163
Number of Sequences: 27780
Number of extensions: 227817
Number of successful extensions: 487
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)