Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13j21
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 118 1e-27
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 77 3e-15
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 66 6e-12
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 57 3e-09
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 48 1e-06
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 44 2e-05
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 42 7e-05
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 40 3e-04
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 35 0.014
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 31 0.13
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 29 0.90
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 27 2.8
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 3.6
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac... 27 3.6
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.8
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.8
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 4.8
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 6.4
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 6.4
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.4
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 25 8.4
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 8.4
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 8.4
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 118 bits (283), Expect = 1e-27
Identities = 64/165 (38%), Positives = 98/165 (59%), Gaps = 9/165 (5%)
Frame = -3
Query: 634 NKFFLTDTEQAPDIAEFGAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPNV 455
N FL++ ++P A G GE + LE++++ +GL+G PNAGKST+L ++ ++ V
Sbjct: 204 NVHFLSENNRSPKFATKGLTGEQKLIELELKTICEIGLVGLPNAGKSTLLNCLTASKSKV 263
Query: 454 APYPFTTLKPHIGTI---LYDDYE--QVAVADLPGLIPGSHMNYGLGIQFLQHVERCRGL 290
Y FTT+ P IGTI + DD+ Q +AD+PG+I G+ GLG FL+HVER + L
Sbjct: 264 GEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPGIIKGASDGKGLGYDFLRHVERAKML 323
Query: 289 VFLLD---GSSSPGDQ-LRVLRRELRGYSAALAHRPALLVVNKID 167
++D + P DQ ++L EL Y L ++ AL++ NK D
Sbjct: 324 CLVIDINPKAKIPADQAFQLLWDELNKYEKNLINKVALVIANKAD 368
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 76.6 bits (180), Expect = 3e-15
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 2/165 (1%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGS 350
VG +GFP+ GKST++ ++ R A Y FTTL G + Y+ ++ + DLPG+I G+
Sbjct: 66 VGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNG-AKIQILDLPGIIEGA 124
Query: 349 HMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVNKI 170
G G Q + C L+F++ P R++ EL G+ L P +V K
Sbjct: 125 KDGRGRGKQVITVARTC-NLIFIVLDVLKPMSHKRIIEEELEGFGIRLNKEPPNIVFKKK 183
Query: 169 DLP--EAKRNYELMRNDYDNVIGVSAKYGVNLQQLLAAIRAIYDE 41
+ L D D + V ++Y VN + A D+
Sbjct: 184 ERGGINITNTVPLTHIDLDEIRAVCSEYRVNSADIAFRCDATIDD 228
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 65.7 bits (153), Expect = 6e-12
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Frame = -3
Query: 535 AHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIP 356
A V +GFP+ GKST+L AI++ + A Y FTTL G + YD E + + DLPG+I
Sbjct: 63 ARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAE-IQMLDLPGIIE 121
Query: 355 GSHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRP--ALLV 182
G+ G G Q + R L+ ++ ++ DQ + EL L +P L
Sbjct: 122 GASQGRG-GRQAVS-AARTADLILMVLDATKAADQREKIEYELEQVGIRLNRQPPNVTLT 179
Query: 181 VNKIDLPEAKRNYELMRNDYDNVIGVSAKYGVNLQQLLAAIRAIYDENDF 32
+ K + L DY + +Y ++ +L IR +DF
Sbjct: 180 IKKNGGIKFNHTVPLTHMDYKMAYNILHEYRIHNADIL--IREDITVDDF 227
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 56.8 bits (131), Expect = 3e-09
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Frame = -3
Query: 517 GFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI--PGSHM 344
G+PN GKS+ + ++RA+ +V PY FTT +G Y Y + V D PG++ P M
Sbjct: 175 GYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDY-KYLRWQVIDTPGILDHPLEQM 233
Query: 343 NYGLGIQFLQHVERCRGLV-FLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVNKID 167
N + +Q + + R V + +D S G + + A++ +LV+NKID
Sbjct: 234 N-TIEMQSITAMAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKID 292
Query: 166 L--PE--AKRNYELMRNDYDN 116
PE ++N EL++ D+
Sbjct: 293 AMRPEDLDQKNQELLQTIIDD 313
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 48.0 bits (109), Expect = 1e-06
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 25/123 (20%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPH--IGTI----------LYDDYEQV 386
+G +G P++GKST+L A++ A +PFTT++P+ IG L D + +
Sbjct: 7 IGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQDKCKPI 66
Query: 385 -------------AVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLR 245
+ D+ GLIPG+H GLG +FL + LV ++D S + + +
Sbjct: 67 YGGCKNGVRSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVVDVSGTTDAEGK 126
Query: 244 VLR 236
V R
Sbjct: 127 VCR 129
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 44.4 bits (100), Expect = 2e-05
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Frame = -3
Query: 526 GLLGFPNAGKSTVLRAISRA-RPNVAPYPFTTLKPHIGTILYDD---------YEQ---- 389
G++G PN GKST RAI+++ N A YP+ T+ P + D Y+
Sbjct: 24 GIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 83
Query: 388 ---VAVADLPGLIPGSHMNYGLGIQFLQHV 308
+ V D+ GL G+ GLG FL HV
Sbjct: 84 PAFLTVFDIAGLTKGASTGVGLGNAFLSHV 113
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 42.3 bits (95), Expect = 7e-05
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARP-NVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPG 353
VGL+GFPNAGKS+++ + + + NVAP P T ++ +++ + D PG++P
Sbjct: 313 VGLIGFPNAGKSSIINTLRKKKVCNVAPIPGETKVWQYVALM----KRIFLIDCPGIVPP 368
Query: 352 S 350
S
Sbjct: 369 S 369
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 292 LVFLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVNKIDL 164
L+ +LD G + + R LR ++ H+ +LV+NK+DL
Sbjct: 220 LIQVLDARDPVGTRCGTVERYLRNEAS---HKHMILVLNKVDL 259
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 40.3 bits (90), Expect = 3e-04
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRAR-PNVAPYPFTTLKP-HI-GTILYDDYE----------- 392
+G++G PN GKST+ + +++ N A YPF T+ P H +L YE
Sbjct: 48 IGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTR 107
Query: 391 ---QVAVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLL 278
Q+ + D GL S GLG FL ++ L L+
Sbjct: 108 IPAQLTIYDTAGLTRNSSKGEGLGNAFLSNIRSVDALFQLV 148
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 34.7 bits (76), Expect = 0.014
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -3
Query: 526 GLLGFPNAGKSTVLRA-ISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI 359
GL+G+PN GKS+ + A + + +V+ P T H TI E+V++ D PGL+
Sbjct: 305 GLVGYPNVGKSSTINALVGSKKVSVSSTPGKT--KHFQTINLS--EKVSLLDCPGLV 357
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -3
Query: 550 EVRSLAHVGLLGFPNAGKSTVLRAISRARPN--VAPYP 443
+++S VG++G+PN GKS+V+ A+ N AP P
Sbjct: 265 KLKSSLTVGVIGYPNVGKSSVINALVNRSANGRSAPCP 302
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 28.7 bits (61), Expect = 0.90
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 604 APDIAEFGAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAISRA 467
APD++ + + L+ + +GL G P +GKST+ +++A
Sbjct: 7 APDVSSYDELYNRAVELLKHQQRVLIGLAGGPGSGKSTLCAILAKA 52
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -3
Query: 547 VRSLAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLP 368
+R +V +LG NAGKS+++ ++ R ++ T + I ++ + V ++D
Sbjct: 236 LRKGINVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTA 295
Query: 367 GLIPG 353
GL G
Sbjct: 296 GLRKG 300
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 187 LVVNKIDLPEAKRNYELMRNDYDNVIGVSAKYGVN 83
L N I PE K + +L ND +IG + Y VN
Sbjct: 4 LKTNVIQDPELKDSLDLQENDRVEIIGDAVHYIVN 38
>SPAC11D3.03c |||meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 451 PYPFTTLKPHIGTILYDDYEQVA-VADLPGLIPGSHM 344
P P PH G+ LY D E A +A+ P + G H+
Sbjct: 22 PKPLPAYYPHPGSPLYADKELYARIANAPKKLVGRHV 58
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 617 GHRTGSGHSRVRGCRRNKHLPSG 549
GH + +G SR+ G N HLPSG
Sbjct: 85 GHSSYAG-SRISGGNSNSHLPSG 106
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 221 PPQLTAQHAELVPGRGATVQQENQPSAPLHVLQELYTQA 337
P ++ QH E V R + AP HV E Y A
Sbjct: 1126 PLEIFNQHLEFVEQRNTNAMVDEGSDAPFHVGNEYYVIA 1164
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = -3
Query: 532 HVGLLGFPNAGKSTVLRAISRARPN------VAPYPFTTLKPHIGTILYDDYEQVAVADL 371
+V +G PN GKS++L ++ V YP T + L++D + V + D
Sbjct: 147 YVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMD-VYMLDT 205
Query: 370 PGLIPGS 350
PG++ S
Sbjct: 206 PGIMTPS 212
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 481 LSARCSSRHSGTPATRRGPVSVPP 552
L R S SG PA PV+VPP
Sbjct: 1021 LPPRSGSSSSGVPAPNLTPVNVPP 1044
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 526 GLLGFPNAGKSTVLRAISR 470
GL G GKST+LRA+SR
Sbjct: 212 GLTGRNGIGKSTLLRALSR 230
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 541 SLAHVGLLGFPNAGKSTVLRAISR 470
S HV ++G N+GKST+L+ +++
Sbjct: 208 SRGHVYVVGEANSGKSTLLKTLAK 231
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 253 QLRVLRRELRGYSAALAHRPALLVVNKIDLPEAKRNYELMRNDYDNVI 110
++ VL+ E S LA + V K K++YE +R+D D VI
Sbjct: 1018 RVEVLKEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVI 1065
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 8.4
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = -3
Query: 325 QFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVNKIDLPEAKRN 146
QFL+ +++ +V GS+ L L REL SA++A + + I PEA +
Sbjct: 60 QFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSS 119
Query: 145 YELMRNDYDNVIGVSAKYGVNLQQ 74
++R D + + G+++Q+
Sbjct: 120 ISMLRPDERPDVSYADVGGLDVQK 143
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +3
Query: 411 IVPMCGFSVVKGYGATLGRARDMALSTVLFPAFGNPSNPTWASERTSRW*MFVSPAAPNS 590
I+P + Y ++ GR D+ L P G P + S TS + P NS
Sbjct: 482 IIPETVTEAISNYDSSTGRTWDICNLNKLHPYSGKPVSYKLISRDTSP--VLSQPGTTNS 539
Query: 591 AMSG 602
SG
Sbjct: 540 DCSG 543
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -3
Query: 526 GLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVAD 374
G++G GKST+LRAI + P P + L + +A+ D
Sbjct: 474 GVVGHNGCGKSTLLRAIGDYKVENFPSPDEVKTCFVAHSLQGEDTSMAILD 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,990
Number of Sequences: 5004
Number of extensions: 61190
Number of successful extensions: 200
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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