Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13j21
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 155 5e-38
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 151 4e-37
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 131 5e-31
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 75 6e-14
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 71 7e-13
07_01_0075 - 558829-560859 54 1e-07
06_01_0668 - 4882174-4884204 54 1e-07
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 52 5e-07
08_01_0664 + 5741111-5741113,5741491-5741658,5741741-5741864,574... 44 1e-04
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 43 3e-04
11_06_0250 + 21701741-21701826,21702094-21702246,21703060-217031... 38 0.008
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 36 0.033
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 36 0.033
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 35 0.058
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 35 0.077
07_03_1298 - 25592788-25592890,25593126-25593229,25593747-255938... 34 0.13
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 32 0.41
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184... 31 0.71
01_05_0595 - 23509472-23509872,23509991-23510045 31 0.71
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 31 0.94
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 31 0.94
03_03_0224 + 15580944-15581036,15581630-15581770,15582385-155824... 31 1.2
02_02_0136 + 7104633-7105247 31 1.2
07_01_0240 - 1749674-1750514,1751157-1752040 30 1.6
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 30 1.6
07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469 30 2.2
05_04_0008 - 17098168-17099097 30 2.2
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785... 30 2.2
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 29 2.9
02_05_1148 - 34458732-34460627,34462299-34462547 29 2.9
09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977 29 3.8
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 29 3.8
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 29 3.8
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 29 5.0
05_06_0090 + 25461568-25462059 29 5.0
03_05_0658 - 26516250-26516720 29 5.0
03_05_0628 - 26245714-26245755,26245854-26245938,26246022-262461... 29 5.0
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 29 5.0
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203... 28 6.6
10_08_0931 - 21647562-21649037 28 6.6
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 28 6.6
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805 28 6.6
01_06_0095 - 26395104-26395871,26396040-26396486 28 6.6
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 28 8.8
08_01_0919 + 9062859-9062994,9063204-9063333,9063424-9064108 28 8.8
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 155 bits (375), Expect = 5e-38
Identities = 78/165 (47%), Positives = 107/165 (64%), Gaps = 1/165 (0%)
Frame = -3
Query: 634 NKFFLTDTEQAPDIAEFGAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPNV 455
N F + T +AP IAE G G LE++ +A VG++G PNAGKST+L AIS A+P +
Sbjct: 420 NAAFKSGTNKAPRIAEKGEKGPEMWIDLELKLVADVGIVGAPNAGKSTLLTAISAAKPTI 479
Query: 454 APYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLD 275
A YPFTTL P++G + D + VADLPGL+ G+H YGLG +FL+H ERC LV ++D
Sbjct: 480 ANYPFTTLLPNLGVVSLDFDATMVVADLPGLLEGAHRGYGLGHEFLRHSERCSVLVHVVD 539
Query: 274 GS-SSPGDQLRVLRRELRGYSAALAHRPALLVVNKIDLPEAKRNY 143
GS P + +R EL +S +L +P ++V NK+DLPEA +
Sbjct: 540 GSGEQPEYEFEAVRLELELFSPSLVDKPYIVVYNKMDLPEASERW 584
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 151 bits (367), Expect = 4e-37
Identities = 84/193 (43%), Positives = 116/193 (60%), Gaps = 10/193 (5%)
Frame = -3
Query: 583 GAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILY 404
G G LE++S+A VGL+G PNAGKST+L A+SRARP +A Y FTTL+P+IG++ Y
Sbjct: 324 GHPGTETYLILELKSIADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSLTY 383
Query: 403 DDYEQVAVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLDGSSS--------PGDQL 248
+DY V VAD+PGLI G+H N GLG FL+H+ER + L ++LD +++ P +QL
Sbjct: 384 EDYFSVKVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVLDLAATLNGRKGVPPWEQL 443
Query: 247 RVLRRELRGYSAALAHRPALLVVNKIDLPEAKRNYELMRNDYDNV--IGVSAKYGVNLQQ 74
R L EL Y L RP+L+V NKID A YE ++ V + A +
Sbjct: 444 RDLVVELEHYQEGLTKRPSLIVANKIDEEGADEMYEELKKRVQGVPMFPICAILQEGVPD 503
Query: 73 LLAAIRAIYDEND 35
L +R + D +D
Sbjct: 504 LRVGLRDLMDASD 516
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 131 bits (317), Expect = 5e-31
Identities = 69/152 (45%), Positives = 99/152 (65%), Gaps = 8/152 (5%)
Frame = -3
Query: 583 GAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILY 404
G GE L +R +A VGL+G PNAGKST+L AI+ ARP++A YPFTTL P++G +
Sbjct: 261 GQPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMPNLGRLGG 320
Query: 403 DD-------YEQVAVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLDGSS-SPGDQL 248
D + +ADLPGLI G+H+ GLG FL+H+ R R +V ++D ++ P D
Sbjct: 321 DPALGALQFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRVIVHVVDAAADDPVDDY 380
Query: 247 RVLRRELRGYSAALAHRPALLVVNKIDLPEAK 152
+++R ELR Y+ RP ++V+NKIDLP+A+
Sbjct: 381 KIVREELRMYNPQYLERPYVVVLNKIDLPKAQ 412
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 74.9 bits (176), Expect = 6e-14
Identities = 47/139 (33%), Positives = 70/139 (50%)
Frame = -3
Query: 583 GAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILY 404
G AGE + + A VGL+GFP+ GKST+L ++ VA Y FTTL G I+Y
Sbjct: 62 GGAGEG--FDVTKSGDARVGLVGFPSVGKSTLLNKLTGTFSEVAAYEFTTLTCIPGVIMY 119
Query: 403 DDYEQVAVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELR 224
++ + DLPG+I G+ G G Q + C ++ +LD + P R++ +EL
Sbjct: 120 KG-AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNVILIVLD-AIKPITHKRLIEKELE 177
Query: 223 GYSAALAHRPALLVVNKID 167
G+ L P L + D
Sbjct: 178 GFGIRLNKTPPNLTFRRKD 196
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 71.3 bits (167), Expect = 7e-13
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Frame = -3
Query: 550 EVRSLAH--VGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVA 377
EV H V L+GFP+ GKST+L ++ A Y FTTL G I Y+D ++ +
Sbjct: 56 EVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIQYND-TKIQLL 114
Query: 376 DLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHR 197
DLPG+I G+ G G Q + + ++ +LD S S G + ++L REL L R
Sbjct: 115 DLPGIIEGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHR-QILTRELEAVGLRLNKR 173
Query: 196 PALLVVNK 173
P + K
Sbjct: 174 PPQIYFKK 181
>07_01_0075 - 558829-560859
Length = 676
Score = 54.0 bits (124), Expect = 1e-07
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Frame = -3
Query: 523 LLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI--PGS 350
+ G+PN GKS+ + I+RA +V PY FTT +G Y Y + V D PG++ P
Sbjct: 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADY-KYLRYQVIDTPGILDRPFE 231
Query: 349 HMNY--GLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVN 176
N I L H+ ++F LD S S G + + ++P ++V N
Sbjct: 232 DRNIIEMCSITALAHLR--AAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLVIVCN 289
Query: 175 KIDL 164
K DL
Sbjct: 290 KTDL 293
>06_01_0668 - 4882174-4884204
Length = 676
Score = 54.0 bits (124), Expect = 1e-07
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Frame = -3
Query: 523 LLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI--PGS 350
+ G+PN GKS+ + I+RA +V PY FTT +G Y Y + V D PG++ P
Sbjct: 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADY-KYLRYQVIDTPGILDRPFE 231
Query: 349 HMNY--GLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVN 176
N I L H+ ++F LD S S G + + ++P ++V N
Sbjct: 232 DRNIIEMCSITALAHLR--AAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLVIVCN 289
Query: 175 KIDL 164
K DL
Sbjct: 290 KTDL 293
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 52.0 bits (119), Expect = 5e-07
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Frame = -3
Query: 523 LLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGSHM 344
L+G PN GKS+++R +S +P V YPFTT +G I+ ++E+ V D PGL+
Sbjct: 249 LVGSPNVGKSSLVRILSSGKPEVCSYPFTTRGILMGHIV-SNHERFQVTDTPGLLTRDDD 307
Query: 343 NYG----LGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVN 176
L + L H+ ++++ D S G + + R L V++
Sbjct: 308 ERNNIEKLTLAVLSHLP--IAVLYVHDLSEDCGTSVADQYITYKHIKERFGDRLWLDVIS 365
Query: 175 KIDLPEAKRNYELMRNDYDNVIGVSAKYG 89
K DL + K + E +D D+ +G ++G
Sbjct: 366 KSDLLDKKTSSEF--DDADDEVGRYRRFG 392
>08_01_0664 +
5741111-5741113,5741491-5741658,5741741-5741864,
5742078-5742169,5742254-5742352,5742476-5742589,
5743190-5743254,5743342-5743467,5743870-5743945,
5744502-5744594,5744944-5744994,5745084-5745182
Length = 369
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Frame = -3
Query: 523 LLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTI------------LYDDYEQVA- 383
++G PN GKST +++ +PF T+ P+ + LY +V+
Sbjct: 1 MVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSA 60
Query: 382 ---VADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLL 278
+ D+ GL+ G+H GLG FL H+ G+ +L
Sbjct: 61 YLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVL 98
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 42.7 bits (96), Expect = 3e-04
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 10/171 (5%)
Frame = -3
Query: 571 ETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPN-VAPYPFTTLKPHIGTILYDDY 395
E H +V +LG PN GKST++ I + + V P TT +G +Y
Sbjct: 114 ELGTSHCANHRSGYVAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEY 173
Query: 394 EQVAVADLPGLIPGSHMNYGLGIQFLQHVERCRG----LVFLLDGSSSPGDQLRVLRREL 227
Q+ + D PG+I + L +++V G ++ ++D P +L +
Sbjct: 174 -QIILYDTPGVI--KKEMHKLDTMMMKNVRSAVGSADCVLVVVDACKMPEKIDEILEEGV 230
Query: 226 RGYSAALAHRPALLVVNKIDL---PEAKRNYELMR--NDYDNVIGVSAKYG 89
L P LLV+NK DL E + E + + D+VI +SAK+G
Sbjct: 231 GNKDTEL---PVLLVLNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFG 278
>11_06_0250 +
21701741-21701826,21702094-21702246,21703060-21703176,
21703288-21703402,21703604-21703624,21703710-21703757,
21704156-21704293,21704789-21704884,21704971-21705084,
21705364-21705432,21705613-21705683,21705785-21705878,
21706202-21706327,21706425-21706514,21706651-21706749
Length = 478
Score = 37.9 bits (84), Expect = 0.008
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 1/160 (0%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPG- 353
V L+G+ NAGKST+L ++ A F TL P +L + + + D G I
Sbjct: 256 VSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRVLMKNGTEFLLTDTVGFIQKL 315
Query: 352 SHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVNK 173
M L+ + +V L+D S P Q ++ + + P L+V NK
Sbjct: 316 PTMLVAAFRATLEEISESSVIVHLVD-ISHPLAQQQIDAVDKVLKELDIESIPKLVVWNK 374
Query: 172 IDLPEAKRNYELMRNDYDNVIGVSAKYGVNLQQLLAAIRA 53
ID + + + +I +SA G L++ AI+A
Sbjct: 375 IDNTDDTLRVK-EEAEKQGIICISAINGDGLEEFCNAIQA 413
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 35.9 bits (79), Expect = 0.033
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRA-ISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI 359
VG +G+PN GKS+ + A + + R V P T H T++ E++ + D PGL+
Sbjct: 333 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKT--KHFQTLVIS--EELILCDCPGLV 386
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 35.9 bits (79), Expect = 0.033
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = -3
Query: 550 EVRSLAHVGLLGFPNAGKSTVLRAISRAR-PNVAPYPFTTLKPHIGTILYDDYEQVAVAD 374
E++ VG++G PN GKS+++ ++ R+R NV P T + + D ++V + D
Sbjct: 264 ELKLAITVGIVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRS--MQEVQLD--KKVKLLD 319
Query: 373 LPGLIPGSHMNYGLGI 326
PG++ N G+ +
Sbjct: 320 CPGVVMLKSSNSGVSV 335
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 35.1 bits (77), Expect = 0.058
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGS 350
VG++G PNAGKS++ + + T I +L Q+ D PGL+ G
Sbjct: 151 VGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQICFFDTPGLMLGH 210
Query: 349 H 347
H
Sbjct: 211 H 211
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 34.7 bits (76), Expect = 0.077
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRA-ISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI 359
VG +G+PN GKS+ + A + + V P T H T++ E++ + D PGL+
Sbjct: 316 VGFVGYPNVGKSSTINALVGEKKTGVTHTPGKT--KHFQTLIIS--EELTLCDCPGLV 369
>07_03_1298 -
25592788-25592890,25593126-25593229,25593747-25593808,
25593957-25594065,25594215-25594355,25594707-25594769,
25594974-25595084,25596140-25596457
Length = 336
Score = 33.9 bits (74), Expect = 0.13
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Frame = -3
Query: 559 YHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAV 380
+H+ ++ HV +LG AGK+T+L + P + P +G + ++
Sbjct: 143 HHVFSKAEFHVVILGVHKAGKTTLLEKVKSIYLKEEGLPHDRIVPTVGL----NIGRIED 198
Query: 379 ADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLD--GSSSPGDQLRVLRRELRGYSAAL 206
A++ + GL + ++ E +++++D +SS D L + L + L
Sbjct: 199 ANVKLVFWDLGGQPGLRTIWEKYYEEAHAVIYVIDSAAASSFEDAKSALEKVL--HHEDL 256
Query: 205 AHRPALLVVNKIDLPEAKRNYELMRN 128
P L+ NK +LP A EL R+
Sbjct: 257 QGVPLLIFANKQELPAAVTEEELARH 282
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAI-SRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI 359
VG +G+PN GKS+V+ + S++ VAP P T T+ +++ + D PG++
Sbjct: 319 VGFVGYPNVGKSSVINTLRSKSVCKVAPIPGETKVWQYITLT----KRIFLIDCPGVV 372
>02_05_1000 +
33417357-33417600,33417692-33417744,33418376-33418413,
33418720-33419114,33420092-33420221,33420512-33421343
Length = 563
Score = 31.5 bits (68), Expect = 0.71
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -3
Query: 520 LGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILY---DDYEQVAVADLPGLIPGS 350
+G GKS LR ++ RPN+ FT + HI LY + A LPG
Sbjct: 243 IGLKRCGKSCRLRWLNYLRPNIKHGDFTEEEEHIICSLYISIGSRWSIIAAQLPGRTDND 302
Query: 349 HMNY 338
NY
Sbjct: 303 IKNY 306
>01_05_0595 - 23509472-23509872,23509991-23510045
Length = 151
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 339 TAWVYSSCSTWRGAEGWFSCWT-VAPRPGTSSACCAVSCGGTAPHWRTDR 193
T W SC A W + W + P P TS + GG P+WR R
Sbjct: 104 TPWSPQSCDMCSNARTWSTSWRGLGPTPLTSFGAPEMELGG--PNWREGR 151
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 31.1 bits (67), Expect = 0.94
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 526 GLLGFPNAGKSTVLRAISRARPNVAPYPF 440
G++G PN GKST+ AI R P+ + F
Sbjct: 64 GIVGLPNVGKSTLFNAIVRNLPSASSEEF 92
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 31.1 bits (67), Expect = 0.94
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 6/133 (4%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRA-ISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPG 353
+ ++G PN GKST+L + R V P T + I T D V + D G +
Sbjct: 314 LAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLT-RDSIRTQFQFDNRTVYLVDTAGWMER 372
Query: 352 SHMNYGLG----IQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRE-LRGYSAALAHRPAL 188
S G +Q +++ R + +LDG + + E L A R +
Sbjct: 373 SGKEKGPASLSVVQSRKNLMRAHIVALVLDGEKIAKSKSSMNHPEVLIARQAIEEGRGLV 432
Query: 187 LVVNKIDLPEAKR 149
++VNK+DL R
Sbjct: 433 VIVNKMDLLRENR 445
>03_03_0224 +
15580944-15581036,15581630-15581770,15582385-15582493,
15582598-15582659,15583704-15583807,15584058-15584160
Length = 203
Score = 30.7 bits (66), Expect = 1.2
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Frame = -3
Query: 532 HVGLLGFPNAGKSTVL---RAISRARPNVAPYPFT-TLKPHIGTILYDDYEQVAVADLPG 365
HV +LG AGK+T+L ++I + P T+ +IG I D ++ DL G
Sbjct: 19 HVLILGVDKAGKTTLLEKIKSIYLKGEGLTPDRIVPTVGLNIGRI-EDANAKLVFWDLGG 77
Query: 364 LIPGSHMNYGLGIQFLQHVERCRGLVFLLD--GSSSPGDQLRVLRRELRGYSAALAHRPA 191
+ GL + ++ + +++++D +SS D L + LR L P
Sbjct: 78 QV-------GLRTIWEKYYQEAHAIIYVIDAAAASSFEDAKSALEKVLR--HEDLKGAPL 128
Query: 190 LLVVNKIDLPEAKRNYELMR 131
L+ NK DLP + EL R
Sbjct: 129 LIFANKQDLPGVITDEELAR 148
>02_02_0136 + 7104633-7105247
Length = 204
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 617 GHRTGSGHSRVRGCRRNKHLPSGGTLT 537
GHR G S R CR HLP+ G+ T
Sbjct: 18 GHRRHRGSSSERSCRAPSHLPAPGSAT 44
>07_01_0240 - 1749674-1750514,1751157-1752040
Length = 574
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 466 ARAIWLSARCSSRHSGTPATRRGPVSVPP 552
A A S+RCS R S TPA+ GP PP
Sbjct: 532 AHAAASSSRCSGRCSTTPASSPGPPPPPP 560
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -3
Query: 544 RSLAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTIL 407
+ L V ++G+ NAGKST++ A+S F T+ P + +++
Sbjct: 285 QELVTVAVVGYTNAGKSTLVSALSETDLYSDDRLFATVDPRLRSVI 330
>07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469
Length = 198
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 333 WVYSSCSTWRGAEGWFSCWTVAPRPGTSSACCAVSCGGTA 214
W S C R AEGW R G ++A A + GG A
Sbjct: 50 WERSGCGARRSAEGWPEAVDTGARSGAATAVEAGARGGEA 89
>05_04_0008 - 17098168-17099097
Length = 309
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = -2
Query: 542 LTGPRRVAGVPECREEHRAESHIARAAQRRTVSLHDAEAAHRHDTVRRL 396
L G R +A VP+C EHRA+ A RR + L A A R V+ L
Sbjct: 260 LHGNRPLAAVPQCPLEHRAKR--GAEAVRRVIQLIIAVQAERRLVVQGL 306
>02_05_0544 +
29876337-29876524,29876850-29876882,29878390-29878577,
29879755-29879811,29879909-29880061,29880812-29881278,
29881477-29881635,29881718-29881834,29881966-29882117,
29883436-29883530,29883619-29884525,29884604-29884688,
29884775-29884843,29885045-29885224,29885367-29885495
Length = 992
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 623 PHGHRTGSGHSRVRGCRRNKHLPSG-GTLTGPRRVAGVPECREEHRAESHIAR 468
PHG HS +++H+ S GTLTGP + G P+ EH A+S I R
Sbjct: 601 PHG--AAFQHSHSYQDHKSEHMSSSPGTLTGPEFLWGSPKPYSEH-AQSPIWR 650
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -3
Query: 526 GLLGFPNAGKSTVL-RAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIP 356
G++G+PN GKS+++ R + R AP P T + + + + + + D PG++P
Sbjct: 404 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRE--LKWVRFG--SDLELLDSPGILP 457
>02_05_1148 - 34458732-34460627,34462299-34462547
Length = 714
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 517 GFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYE 392
G N G+ T+LR + RAR + + T+L P +++D E
Sbjct: 158 GHQNGGQMTILRPLPRARSSGRLHHMTSLLPDTDRSIFNDDE 199
>09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977
Length = 513
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = -3
Query: 541 SLAHVGLLGFPNAGKSTVLRAISRAR-----PNV--APYPFTTLKP-HIGTILYDDYEQV 386
S +V +G N GKST+L AI+R P + AP P TTL + +L Q
Sbjct: 232 SRGNVWAVGARNVGKSTLLNAIARCSGIEGGPTLTEAPVPGTTLDVIQVDGVL---GSQA 288
Query: 385 AVADLPGLIPGSHM 344
+ D PGL+ G +
Sbjct: 289 KLFDTPGLLHGHQL 302
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 596 HSRVRGCRRNKHLPSGGTLTGPRRVAGVPECREEHRAESHIAR 468
H R R C+R + LP GG + RVA + + H A +AR
Sbjct: 157 HDRRRRCQRPRLLPDGGKIKAALRVAAL---KAAHPALDELAR 196
>05_01_0595 +
5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -2
Query: 623 PHGHRTGSGHSRVRGCRRNKHLPSGGTLTGP----RRVAGVPECREEHR 489
P HR G SR R + P GG + P R+ AG P CR HR
Sbjct: 35 PAVHRRAGGCSRAPV--RAEATPRGGGVGAPAHAFRQAAGAPPCRHPHR 81
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -2
Query: 620 HGHRTGSGHSRVRGCRRNKHLPSGGTLTGPRRVAGVPECREEHRAESHIARAAQRRTVSL 441
H +G +G R+++ +P LT + E R+ + +SH ++ RR+ S
Sbjct: 123 HEPESGGDADDTKGDRQSQRVPKSPLLTREKERKHKDEHRKSYPKDSH-SKEQSRRSPSR 181
Query: 440 HDAEAAH-RHDTVRR 399
H + H RH + R
Sbjct: 182 HHSSQDHARHHSRSR 196
>05_06_0090 + 25461568-25462059
Length = 163
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 692 LDREGLMFVAARGWGGR*RKQIFPHGHRTGSGHSRVR 582
L E L+ +A G R R + HG R G GH+R R
Sbjct: 14 LSNELLLLLAEGGSRSRRRILLHDHGRRRGGGHARRR 50
>03_05_0658 - 26516250-26516720
Length = 156
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 188 ARRQQDRLARSETQLRAHEE*LRQCHRRVGQVRGQSA 78
ARR + R R +LRA E LR+C+R + RG +A
Sbjct: 64 ARRSRARKQRHLDELRARAERLRRCNRELA-ARGHAA 99
>03_05_0628 -
26245714-26245755,26245854-26245938,26246022-26246197,
26246325-26246432,26246713-26246788,26246878-26246939,
26247228-26247323,26247735-26247861,26247969-26248036
Length = 279
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = -3
Query: 586 FGAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAIS------RARPNVAPYPFTTLKP 425
FG N ++R VG++G GKSTVL+ ++ + + A + T++
Sbjct: 53 FGNKKVLNGISFKIRHGEAVGIIGPSGTGKSTVLKVMAGLLAPDKVFQSAALFDSLTVRE 112
Query: 424 HIGTILYDD 398
++G +LY++
Sbjct: 113 NVGFLLYEN 121
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -2
Query: 572 RNKHLPSGGTLTGPRRVAGVPECREEHRAESHIARAAQ 459
R HL GG G AG P HR H +AQ
Sbjct: 6 RKLHLSGGGGSGGGAAAAGAPSGEHHHRPRQHRRSSAQ 43
>11_01_0268 -
2029007-2029464,2029521-2029615,2030815-2031077,
2031154-2031279,2031404-2032996
Length = 844
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -3
Query: 325 QFLQHVERCRGLVFLLD--GSSSPGDQLRVLRRELR-GYSAALAHRPALLVVNKIDLPEA 155
+F+Q + RGL FLL GSS D + ++ S HRP VV +++ EA
Sbjct: 701 EFIQSINSPRGLRFLLRGWGSSRVTDPAGAVAQDAELMESVGAGHRPD--VVALLEILEA 758
Query: 154 KRNYELMRNDYDNVIGVSA 98
R L R + V+ ++A
Sbjct: 759 HRAALLCRLAHSQVVKIAA 777
>10_08_0931 - 21647562-21649037
Length = 491
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 401 VVQYRADVRLQRREGIRCDVGPRARYGSQHG 493
+ ++R +RLQR E I+ GPR G +HG
Sbjct: 463 IARFREQIRLQRIESIKKSAGPR---GVKHG 490
>06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 547 VRSLAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYE--QVAVAD 374
+ S VG++G AGKS++L A+ R P G IL DD++ ++AV D
Sbjct: 1146 ISSGMQVGIIGRTGAGKSSILNALLRLAPICN-----------GRILVDDFDVAKLAVRD 1194
Query: 373 LPG 365
L G
Sbjct: 1195 LRG 1197
>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
Length = 456
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 541 SLAHVGLLGFPNAGKSTVLR 482
S AHV +LG NAGKS L+
Sbjct: 344 SCAHVSILGIANAGKSAFLK 363
>01_06_0095 - 26395104-26395871,26396040-26396486
Length = 404
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 635 KQIFPHGHRTGSGHSRVRGCRRNKHLPSGGTLTGPRRVAGVPECREEHRAESHIARAAQR 456
+ + P H + C+R + L S T+ R + EE+RA +A A R
Sbjct: 287 RMLSPMSHFENGTWDQGGNCKRTQPLRSNETVMEGRDLHFYTAQMEEYRAAEKVAEAKGR 346
Query: 455 RTVSLHDAEAA 423
R + L DA AA
Sbjct: 347 R-MMLMDATAA 356
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 27.9 bits (59), Expect = 8.8
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -3
Query: 556 HLEVRSLAHVGLLGFPNAGKSTVL-RAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAV 380
H+ L V ++G PN GKS + R + R V P T G + D E V
Sbjct: 154 HIPDNLLPRVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDRE-FMV 212
Query: 379 ADLPGLIPGSHMNYGL 332
D G+I S G+
Sbjct: 213 IDTGGVITLSKSQAGV 228
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRA-ISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGL 362
+ ++G PN GKS++L A + R V+P TT +D ++ + D G+
Sbjct: 376 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGI 432
>08_01_0919 + 9062859-9062994,9063204-9063333,9063424-9064108
Length = 316
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = -3
Query: 520 LGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILY---DDYEQVAVADLPGLIPGS 350
+G GKS LR ++ RPN+ FT + I LY + A LPG
Sbjct: 45 IGLKRCGKSCRLRWLNYLRPNIKHGDFTPEEDSIICSLYISIGSRWSIIAAQLPGRTDND 104
Query: 349 HMNY 338
NY
Sbjct: 105 VKNY 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,909,556
Number of Sequences: 37544
Number of extensions: 522137
Number of successful extensions: 1928
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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