Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13j21
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical pr... 198 3e-51
U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical pr... 90 1e-18
Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical pr... 65 4e-11
L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical p... 65 4e-11
AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical... 65 4e-11
Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical pr... 52 4e-07
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 51 1e-06
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 51 1e-06
Z47075-7|CAA87384.1| 394|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z36752-8|CAA85330.1| 394|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 36 0.022
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 36 0.022
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 36 0.022
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 36 0.022
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 32 0.36
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical p... 29 3.4
Z81500-8|CAM84816.1| 284|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z70682-5|CAA94586.1| 345|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z54306-3|CAE17716.1| 165|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL132865-12|CAB60601.1| 345|Caenorhabditis elegans Hypothetical... 29 4.5
Z92789-2|CAB07219.1| 344|Caenorhabditis elegans Hypothetical pr... 28 7.8
AC006720-6|AAF60450.1| 346|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical
protein M01E5.2 protein.
Length = 358
Score = 198 bits (483), Expect = 3e-51
Identities = 101/203 (49%), Positives = 139/203 (68%), Gaps = 5/203 (2%)
Frame = -3
Query: 634 NKFFLTDTEQAPDIAEFGAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPNV 455
N+F++++ + P AE+G GE IY +E+R +A GL+GFPNAGKS++LRAISRA+P V
Sbjct: 156 NQFYVSNEVRKPFKAEYGGEGEELIYDVEMRVMATAGLVGFPNAGKSSLLRAISRAKPKV 215
Query: 454 APYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLD 275
A YPFTTL PHIG + Y+D+EQ+AVAD+PGLI SH+N GLGI FL+H+ERC L ++LD
Sbjct: 216 ASYPFTTLHPHIGVVFYEDFEQIAVADIPGLIEDSHLNKGLGISFLKHIERCESLWYVLD 275
Query: 274 GSS-SPGDQLRVLRRELRGYSAALAHRPALLVVNKIDL----PEAKRNYELMRNDYDNVI 110
S+ S DQ ++LR EL GY L R + +V+NKIDL PE + ++ V
Sbjct: 276 YSTGSLTDQYKMLRVELEGYQKGLGDRASTIVINKIDLSGKSPEEEAHHLSSLFPNLPVF 335
Query: 109 GVSAKYGVNLQQLLAAIRAIYDE 41
VSA+ + L+ LL +R YD+
Sbjct: 336 PVSAQQRIGLEPLLEHLREQYDK 358
>U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical
protein C26E6.12 protein.
Length = 390
Score = 90.2 bits (214), Expect = 1e-18
Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 20/159 (12%)
Frame = -3
Query: 583 GAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRA-ISRARPNVAPYPFTTLKPHIGTI- 410
G+ G+T + ++ ++GLLGFPNAGKST+L+A + +A Y FTT+ P +
Sbjct: 146 GSKGDTFDVEIHLKLRPNIGLLGFPNAGKSTLLKALVPEKSVKIADYAFTTVNPQVAFFK 205
Query: 409 ------LYDDYEQVAVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLDGSS------ 266
+ D +++ADLPG+I G+ MN G G +FL+H+E +V ++D
Sbjct: 206 NKEEFSVEDPSFTLSIADLPGIIEGASMNRGKGYKFLKHLEYADIVVMVVDCQGFQLKNE 265
Query: 265 ------SPGDQLRVLRRELRGYSAALAHRPALLVVNKID 167
+P + + +L RE+ Y+ LA +P + V+NKID
Sbjct: 266 LDCPFRNPLESIALLNREVELYNQKLARKPVICVLNKID 304
>Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 65.3 bits (152), Expect = 4e-11
Identities = 39/114 (34%), Positives = 58/114 (50%)
Frame = -3
Query: 535 AHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIP 356
A +G +GFP+ GKST+L ++ VA Y FTTL G I Y ++ + DLPG+I
Sbjct: 63 ARIGFVGFPSVGKSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKG-AKIQLLDLPGIIE 121
Query: 355 GSHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRP 194
G+ G G Q + C ++ +LD P ++L EL G+ L +P
Sbjct: 122 GAKDGKGRGKQVIAVARTCSLILMVLD-VMKPLQHKKLLEYELEGFGIRLNKQP 174
>L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical
protein C02F5.3 protein.
Length = 366
Score = 65.3 bits (152), Expect = 4e-11
Identities = 39/121 (32%), Positives = 60/121 (49%)
Frame = -3
Query: 535 AHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIP 356
A V ++GFP+ GKST+L +++ A Y FTTL G I Y+ + + DLPG+I
Sbjct: 63 ARVAMVGFPSVGKSTLLSSMTSTHSEAAGYEFTTLTCIPGVISYNG-ANIQLLDLPGIIE 121
Query: 355 GSHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVN 176
G+ G G Q + + ++ +LD S Q +L REL L +P + V
Sbjct: 122 GASQGKGRGRQVISVAKTADLILMMLDAGKS-DQQKMLLERELEAVGIRLNKKPPNIYVK 180
Query: 175 K 173
+
Sbjct: 181 Q 181
>AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 65.3 bits (152), Expect = 4e-11
Identities = 39/114 (34%), Positives = 58/114 (50%)
Frame = -3
Query: 535 AHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIP 356
A +G +GFP+ GKST+L ++ VA Y FTTL G I Y ++ + DLPG+I
Sbjct: 63 ARIGFVGFPSVGKSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKG-AKIQLLDLPGIIE 121
Query: 355 GSHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRP 194
G+ G G Q + C ++ +LD P ++L EL G+ L +P
Sbjct: 122 GAKDGKGRGKQVIAVARTCSLILMVLD-VMKPLQHKKLLEYELEGFGIRLNKQP 174
>Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical
protein W08E3.3 protein.
Length = 395
Score = 52.0 bits (119), Expect = 4e-07
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 27/169 (15%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDD---------YEQVA-- 383
VG+LG PN GKST ++++ +PF T+ P+ + D Y+ +
Sbjct: 24 VGILGLPNVGKSTFFNVLTKSEAQAENFPFCTIDPNESRVAVQDDRFDWLVNHYKPASKV 83
Query: 382 -----VADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFL-----------LDGSSSPGDQ 251
V D+ GL+ G+ GLG FL HV C L L ++G P
Sbjct: 84 PAFLNVTDIAGLVKGASEGQGLGNAFLSHVSACDALFHLCRAFDDDDVTHVEGEVDPVRD 143
Query: 250 LRVLRRELRGYSAALAHRPALLVVNKIDLPEAKRNYELMRNDYDNVIGV 104
L ++ EL P ++K++ + N + + +YD ++ V
Sbjct: 144 LEIISNELFAKDLQFIDGP----LDKVEKLFTRANDKTKKIEYDTLVRV 188
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 50.8 bits (116), Expect = 1e-06
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Frame = -3
Query: 523 LLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI--PGS 350
L GFPN GKS+ + ++RA V PY FTT ++G + Y + + V D PG++ P
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDY-RFLRWQVIDTPGILDQPLE 232
Query: 349 HMN--YGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVN 176
N + L H++ ++F++D S + A++P L+ +N
Sbjct: 233 DRNTIEMQAVTALAHLK--ASVLFMMDVSEQCDRSIEEQLHLFESIRPLFANKPVLIGLN 290
Query: 175 KIDL 164
K+D+
Sbjct: 291 KVDI 294
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 50.8 bits (116), Expect = 1e-06
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Frame = -3
Query: 523 LLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI--PGS 350
L GFPN GKS+ + ++RA V PY FTT ++G + Y + + V D PG++ P
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDY-RFLRWQVIDTPGILDQPLE 232
Query: 349 HMN--YGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSAALAHRPALLVVN 176
N + L H++ ++F++D S + A++P L+ +N
Sbjct: 233 DRNTIEMQAVTALAHLK--ASVLFMMDVSEQCDRSIEEQLHLFESIRPLFANKPVLIGLN 290
Query: 175 KIDL 164
K+D+
Sbjct: 291 KVDI 294
>Z47075-7|CAA87384.1| 394|Caenorhabditis elegans Hypothetical
protein E02H1.2 protein.
Length = 394
Score = 45.6 bits (103), Expect = 4e-05
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGS 350
+ ++G PN GKS + ++ R + T +I + D Q+ D PG + S
Sbjct: 36 LAVIGAPNVGKSLLTNSLIRCPLSAVSSKMDTTTRNISASICSDSTQLVFVDSPGAVSTS 95
Query: 349 HMNYGL-------GIQFLQHVERC---RGLVFLLDGSSSPGDQL--RVLRRELRGYSAAL 206
H+ + G + LQ ER V ++ S++PG + RVL L YS
Sbjct: 96 HVRQTMKKTSATSGDRVLQDPERALQRAQHVLVVQDSTAPGAYIHHRVLHM-LHRYS--- 151
Query: 205 AHRPALLVVNKIDL 164
H P++LV+NKIDL
Sbjct: 152 -HVPSILVMNKIDL 164
>Z36752-8|CAA85330.1| 394|Caenorhabditis elegans Hypothetical
protein E02H1.2 protein.
Length = 394
Score = 45.6 bits (103), Expect = 4e-05
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGS 350
+ ++G PN GKS + ++ R + T +I + D Q+ D PG + S
Sbjct: 36 LAVIGAPNVGKSLLTNSLIRCPLSAVSSKMDTTTRNISASICSDSTQLVFVDSPGAVSTS 95
Query: 349 HMNYGL-------GIQFLQHVERC---RGLVFLLDGSSSPGDQL--RVLRRELRGYSAAL 206
H+ + G + LQ ER V ++ S++PG + RVL L YS
Sbjct: 96 HVRQTMKKTSATSGDRVLQDPERALQRAQHVLVVQDSTAPGAYIHHRVLHM-LHRYS--- 151
Query: 205 AHRPALLVVNKIDL 164
H P++LV+NKIDL
Sbjct: 152 -HVPSILVMNKIDL 164
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -3
Query: 550 EVRSLAHVGLLGFPNAGKSTVLRAISRARP-NVAPYPFTTLKPHIGTILYDDYEQVAVAD 374
++++ VG++GFPN GKS+V+ ++ R + NV P T I + D + + + D
Sbjct: 255 DIKTSIRVGVVGFPNVGKSSVINSLKRRKACNVGNLPGIT--KEIQEVELD--KNIRLID 310
Query: 373 LPGLI 359
PG+I
Sbjct: 311 SPGVI 315
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 36.3 bits (80), Expect = 0.022
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARP-NVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPG 353
VG++G+PN GKS+ + ++ + +V+ P T H TI D Q+ + D PGL+
Sbjct: 132 VGMVGYPNVGKSSTINKLAGGKKVSVSATPGKT--RHFQTIHID--SQLCLCDCPGLVMP 187
Query: 352 SHMNYGLGIQFLQHV 308
S ++G FL +
Sbjct: 188 S-FSFGRSEMFLNGI 201
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 36.3 bits (80), Expect = 0.022
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARP-NVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPG 353
VG++G+PN GKS+ + ++ + +V+ P T H TI D Q+ + D PGL+
Sbjct: 132 VGMVGYPNVGKSSTINKLAGGKKVSVSATPGKT--RHFQTIHID--SQLCLCDCPGLVMP 187
Query: 352 SHMNYGLGIQFLQHV 308
S ++G FL +
Sbjct: 188 S-FSFGRSEMFLNGI 201
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 36.3 bits (80), Expect = 0.022
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -3
Query: 529 VGLLGFPNAGKSTVLRAISRARP-NVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPG 353
VG++G+PN GKS+ + ++ + +V+ P T H TI D Q+ + D PGL+
Sbjct: 301 VGMVGYPNVGKSSTINKLAGGKKVSVSATPGKT--RHFQTIHID--SQLCLCDCPGLVMP 356
Query: 352 SHMNYGLGIQFLQHV 308
S ++G FL +
Sbjct: 357 S-FSFGRSEMFLNGI 370
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = -3
Query: 535 AHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIP 356
+ V LLG AGK++++R + + + + P T+ +I TI Y +Y ++ D+ GL
Sbjct: 370 SRVVLLGLDGAGKTSIVRRLKKVQMDTVMAPHPTIGFNIETIHYKNY-RLNFWDVGGLPK 428
Query: 355 GSHM 344
H+
Sbjct: 429 LRHL 432
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
protein F32H2.5 protein.
Length = 2586
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 538 LAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIG 416
L + GF + +L+A P + P+PFT L + G
Sbjct: 396 LIGINSFGFGGSNTHVILKAADHIAPPITPHPFTKLVTYCG 436
>Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 197 SVRQCGAVPPQLTAQHAELVPGRGATVQQENQPSAPLHVLQELYTQAVVHV*ARDQ-PRE 373
SV + PP T +HA+++P + E + S P + +V AR Q P+
Sbjct: 24 SVPSSASQPPPSTTKHAKILPSFSCSPPMERKDSRPTLITANTADHSVGSPPARRQPPKR 83
Query: 374 VG 379
VG
Sbjct: 84 VG 85
>Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 197 SVRQCGAVPPQLTAQHAELVPGRGATVQQENQPSAPLHVLQELYTQAVVHV*ARDQ-PRE 373
SV + PP T +HA+++P + E + S P + +V AR Q P+
Sbjct: 24 SVPSSASQPPPSTTKHAKILPSFSCSPPMERKDSRPTLITANTADHSVGSPPARRQPPKR 83
Query: 374 VG 379
VG
Sbjct: 84 VG 85
>Z81500-8|CAM84816.1| 284|Caenorhabditis elegans Hypothetical
protein F11D11.14 protein.
Length = 284
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 294 GWFSCWTVAPRPGTSSACCAVSCGGT 217
GW C T+ P G S +SCG T
Sbjct: 244 GWEDCLTIVPGSGQGSTINDLSCGNT 269
>Z70682-5|CAA94586.1| 345|Caenorhabditis elegans Hypothetical
protein F08G5.6 protein.
Length = 345
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 502 RHSGT-PATRRGPVSVPPDGKCLFRLQPRTLLCPEPVL 612
RH+ T PA + PV +PP+ CL+ ++ ++ VL
Sbjct: 30 RHNATIPAGAKEPVLIPPNFNCLYNIKVPAMVYARVVL 67
>Z54306-3|CAE17716.1| 165|Caenorhabditis elegans Hypothetical
protein B0457.6 protein.
Length = 165
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 634 FLYLPPHPRAATNINPSLSKSPIT*PF 714
FL LPP P A T +PS S +P T PF
Sbjct: 134 FLGLPPIPEATTPASPS-SNAPTTNPF 159
>AL132865-12|CAB60601.1| 345|Caenorhabditis elegans Hypothetical
protein Y62E10A.14 protein.
Length = 345
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 143 VVAFRFGQVYLVDDEQGRSVRQCGAVPPQLTAQHAELVPGRGATVQ-QENQPSAPLHVLQ 319
+ A R+ Y +D + C A+PPQ H ++ G G V+ ++Q LH +
Sbjct: 12 LTATRYVVNYNEEDHLETARAGCSALPPQPNINHDVIIEGHGEDVELVDDQNYRSLHRID 71
Query: 320 E 322
E
Sbjct: 72 E 72
>Z92789-2|CAB07219.1| 344|Caenorhabditis elegans Hypothetical
protein H02I12.5 protein.
Length = 344
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 179 DDEQGRSVRQ-CGAVPPQLTAQHAELVPGRGATVQ-QENQPSAPLHVLQE 322
D+ Q + R C A+PPQ H ++ G G V+ E++ LH + E
Sbjct: 23 DEYQLETARAGCSALPPQPNINHDAIIEGHGEDVELVEDKNYRSLHRIDE 72
>AC006720-6|AAF60450.1| 346|Caenorhabditis elegans Hypothetical
protein Y17G9B.9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 143 VVAFRFGQVYLVDDEQGRSVRQCGAVPPQLTAQHAELVPGRGATVQ-QENQPSAPLHVLQ 319
+ A R+ Y +D + C ++PPQ H ++ G G V+ E++ +H +
Sbjct: 12 LTATRYVANYAEEDRLETARAGCSSLPPQPNINHDVIIEGHGEDVELVEDENYCSVHRID 71
Query: 320 E 322
E
Sbjct: 72 E 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,352,686
Number of Sequences: 27780
Number of extensions: 389168
Number of successful extensions: 1150
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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