Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j21
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.9  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   6.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.0  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 623 PHGHRTGSGHSRVRGCRRNKH 561
           PH H  G GHS +     + H
Sbjct: 414 PHHHTMGHGHSHIHATPHHHH 434


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 532 HVGLLGFPNAGKSTVLRAIS 473
           ++G +G    GKST+++AIS
Sbjct: 44  NIGTIGHVAHGKSTIVKAIS 63


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 235 RELRGYSA-ALAHRPALLVVNKIDLPEAKRNYELMRNDYDNVIGV 104
           +ELR  +  A AH   L +++K      +  YE++R+ YDN I V
Sbjct: 15  KELRNLAQQAFAHSNQL-IIDKSLKGWKEVEYEVVRDAYDNCITV 58


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 281 QENQPSAPLHVLQELYTQ--AVVHV 349
           QEN P   L  LQEL+ Q  A+V +
Sbjct: 228 QENSPLLDLRQLQELHLQRNAIVEI 252


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 143 VVAFRFGQVYLVDDEQGRSVRQCGAV 220
           VV     ++YL ++E  + + +C A+
Sbjct: 82  VVVREIAEIYLDENEVNKLITECSAI 107


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 382 VADLPGLIPGSHMNYGLGIQ 323
           V  +PGL+ G    +G G+Q
Sbjct: 871 VQGVPGLLQGVQQVFGQGVQ 890


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -1

Query: 291 WFSCWTVAPRPGTSSACCAV 232
           WF  WTV  + G     C +
Sbjct: 137 WFKGWTVERKEGKVEGKCLI 156


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -1

Query: 291 WFSCWTVAPRPGTSSACCAV 232
           WF  WTV  + G     C +
Sbjct: 153 WFKGWTVERKEGKVEGKCLI 172


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -1

Query: 291 WFSCWTVAPRPGTSSACCAV 232
           WF  WTV  + G     C +
Sbjct: 210 WFKGWTVERKEGKVEGKCLI 229


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 463  PNVAPYPFTTLKPHIGTILYDDY 395
            P   P PF    P++ TIL + Y
Sbjct: 1167 PPFMPSPFMAGAPNVPTILPEQY 1189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,443
Number of Sequences: 438
Number of extensions: 4654
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)