Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j15
         (190 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    23   5.3  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    23   5.3  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    22   9.3  

>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 117 KINRRKIKTHPFC-TQAQHHKQ 179
           +I  RKI THP C T A+ ++Q
Sbjct: 242 EIVERKIDTHPGCRTVAERYEQ 263


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 154 QNGCVLIFLRFILHLSITFHT 92
           +NGC+L+F   +L  S+T  T
Sbjct: 3   KNGCLLLFAYSLLSFSLTAAT 23


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 51  GQGKTTIHTMFLVVV*NVIDKCKINRRKIKTHP 149
           GQGK    ++++ +  NVID+ +    K   HP
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHP 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,723
Number of Sequences: 5004
Number of extensions: 11394
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)