Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j15
         (190 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical pr...    30   0.20 
AC006689-1|AAF39971.2|  257|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z81498-3|CAB04084.3|  260|Caenorhabditis elegans Hypothetical pr...    26   4.3  
EF445112-1|ABQ01579.1|  265|Caenorhabditis elegans scramblase 4 ...    26   4.3  
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    25   7.5  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    25   7.5  
U64858-8|AAB18286.3|  288|Caenorhabditis elegans Serpentine rece...    25   9.9  
AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine re...    25   9.9  

>Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical
           protein F01G4.5 protein.
          Length = 269

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 146 MCFDFSSIYFTFINNVSYYD*KHCVNCGFTLT 51
           M +DFS I+F   N    Y  K C  C +TLT
Sbjct: 131 MVYDFSQIFFLHFNCFDAYATKLCYLCYYTLT 162


>AC006689-1|AAF39971.2|  257|Caenorhabditis elegans Hypothetical
           protein T22E7.2 protein.
          Length = 257

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 98  SYYD*KHCVNCGFTLTEI*XPCIW 27
           +Y + KHC  C F + +    C+W
Sbjct: 46  TYRETKHCKRCNFCIDDFDHHCVW 69


>Z81498-3|CAB04084.3|  260|Caenorhabditis elegans Hypothetical
           protein F11A6.2 protein.
          Length = 260

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
 Frame = -1

Query: 181 CCLWCCACV---QNGCVL 137
           CC  CCACV   Q+ CV+
Sbjct: 107 CCYGCCACVGCCQHDCVV 124


>EF445112-1|ABQ01579.1|  265|Caenorhabditis elegans scramblase 4
           protein.
          Length = 265

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
 Frame = -1

Query: 181 CCLWCCACV---QNGCVL 137
           CC  CCACV   Q+ CV+
Sbjct: 107 CCYGCCACVGCCQHDCVV 124


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 178 CLWCCACVQNGCV 140
           C+WC  CV + C+
Sbjct: 185 CIWCGCCVHDTCI 197


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 178 CLWCCACVQNGCV 140
           C+WC  CV + C+
Sbjct: 185 CIWCGCCVHDTCI 197


>U64858-8|AAB18286.3|  288|Caenorhabditis elegans Serpentine
           receptor, class t protein25 protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 175 LWCCACVQNGCVLI 134
           LWCC+C  N  +L+
Sbjct: 77  LWCCSCFMNILLLV 90


>AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine
           receptor, class t protein26 protein.
          Length = 297

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 175 LWCCACVQNGCVLI 134
           LWCC+C+ N  +L+
Sbjct: 98  LWCCSCLLNILLLV 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,208,220
Number of Sequences: 27780
Number of extensions: 64817
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)