Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j15
         (190 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   0.33 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   3.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   4.1  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              18   9.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    18   9.5  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 184 ACCLWCC 164
           +CC WCC
Sbjct: 10  SCCCWCC 16


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 174 CGVVLAYKMDVF 139
           CG  +AY  DVF
Sbjct: 320 CGSAIAYVSDVF 331


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 57  GKTTIHTMFLVVV*NVIDKCKI 122
           G   ++ + L+++ N+ID C I
Sbjct: 73  GSVPVNNINLILLQNIIDICWI 94


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 122 YFTFINNVSYYD 87
           Y  F+N  +YYD
Sbjct: 134 YSAFVNLTAYYD 145


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -1

Query: 187 FACCLWCCACVQNGCVL 137
           F  C+W    V NG  L
Sbjct: 71  FLACIWQQTGVMNGSEL 87


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 62  NHNSHNVFSR 91
           NH++H V SR
Sbjct: 352 NHDNHRVASR 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,363
Number of Sequences: 438
Number of extensions: 757
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used:  2558940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)