Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j14
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0947 + 9399366-9399568,9399683-9399855,9400745-9401130,940...    28   5.1  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   5.1  
01_03_0282 - 14580875-14580891,14582126-14585855                       28   5.1  
05_06_0185 - 26201013-26201429,26201537-26201695,26201774-262026...    27   6.7  
05_06_0183 - 26182481-26182897,26183005-26183163,26183261-261837...    27   6.7  
05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216     27   6.7  
04_04_1437 + 33600282-33601562                                         27   6.7  
05_03_0553 - 15389376-15389499,15391167-15391576                       27   8.8  
05_03_0544 + 15239186-15239589,15242963-15243188                       27   8.8  

>08_01_0947 +
           9399366-9399568,9399683-9399855,9400745-9401130,
           9401791-9402090,9402177-9402266,9403213-9403336,
           9403452-9403615,9404572-9404802
          Length = 556

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 325 IGLYNSGPSGTDATXPVSSIIHV 393
           +GLYN GPS  D   P+S+   V
Sbjct: 81  LGLYNDGPSRNDTQSPLSNFFGV 103


>01_03_0284 - 14595643-14595663,14595978-14596018,14596379-14596732,
            14597023-14597494,14597524-14600001
          Length = 1121

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -2

Query: 392  TCIIDETGXVASVPDGPELYNPIRSSDI-----MKSQPNRLQIR 276
            T +I+    + S+PDGP  Y+ + S +I     MKS P  L+ R
Sbjct: 1039 TLMIERCKSLTSLPDGPRAYSSLESLEIKYCPAMKSLPGCLKQR 1082


>01_03_0282 - 14580875-14580891,14582126-14585855
          Length = 1248

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -2

Query: 365  VASVPDGPELYNPIRSSDI-----MKSQPNRLQIR 276
            + S+PDGP  Y+ + + +I     MKS P RLQ R
Sbjct: 1190 LVSLPDGPGAYSSLETLEIKYCPAMKSLPGRLQQR 1224


>05_06_0185 -
           26201013-26201429,26201537-26201695,26201774-26202601,
           26203483-26203605
          Length = 508

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 195 RNVRRVFFVSAKRSVQLTCVAFKFQNVSNLQTIGL-TFHD 311
           +NV  + F SAK  ++LTC     +N ++L+ + L T HD
Sbjct: 400 KNVNIIGFCSAKSMIELTC--HILENATSLECLTLDTIHD 437


>05_06_0183 -
           26182481-26182897,26183005-26183163,26183261-26183714,
           26184370-26184485
          Length = 381

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 195 RNVRRVFFVSAKRSVQLTCVAFKFQNVSNLQTIGL-TFHD 311
           +NV  + F SAK  ++LTC     +N ++L+ + L T HD
Sbjct: 273 KNVNIIGFCSAKSMIELTC--HILENATSLECLTLDTIHD 310


>05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216
          Length = 137

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 260 EGDTRELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 120
           E D+ + D     Y +Y    PL L  Q+ +  N F+   + + A+P
Sbjct: 9   ECDSAQFDVLGQSYRQYQLQSPLLLQQQVFSPYNEFVIQQYGTAASP 55


>04_04_1437 + 33600282-33601562
          Length = 426

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 336 QLGAVXHRRHXTRFVNYTRGAISKSQFLRVDLQVLGR 446
           +LG    RR+ +    Y    +SK+ F +V LQ LGR
Sbjct: 47  RLGPDRSRRYFSYLKGYLSNRLSKADFDKVCLQTLGR 83


>05_03_0553 - 15389376-15389499,15391167-15391576
          Length = 177

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 221 YEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 120
           Y +Y    PL L  Q+++  N F+R  +   A+P
Sbjct: 28  YRQYQLQSPLLLQQQVLSPYNEFVRQQYGITASP 61


>05_03_0544 + 15239186-15239589,15242963-15243188
          Length = 209

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 245 ELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 120
           + D     Y +Y    P+ L  Q+++  N F+R  +   A+P
Sbjct: 20  QFDVLCQSYRQYQLQSPVLLQQQVLSPYNEFVRQQYGIAASP 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,819,059
Number of Sequences: 37544
Number of extensions: 209972
Number of successful extensions: 504
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)