Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j14
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical pr...    31   0.64 
U39645-8|AAA80361.1|  414|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.     27   6.0  

>U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical
           protein C14F11.1b protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 440 EYLQIDTEELRFRNSATCIIDETGXVASVPDGPE 339
           ++  +D ++ R+ + +TC  DETG +A +   PE
Sbjct: 154 KFAGVDVKQYRYYDKSTCGFDETGALADIAQIPE 187


>U39645-8|AAA80361.1|  414|Caenorhabditis elegans Hypothetical
           protein C14F11.1a protein.
          Length = 414

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 440 EYLQIDTEELRFRNSATCIIDETGXVASVPDGPE 339
           ++  +D ++ R+ + +TC  DETG +A +   PE
Sbjct: 154 KFAGVDVKQYRYYDKSTCGFDETGALADIAQIPE 187


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -2

Query: 443 PEYLQIDTEELRFRNSATCIIDETGXVASVPDGPELYNPIRSSDIMKSQPNRLQI 279
           P    I TEE       TC+ D  G    +    E Y  + S D + S+P  L I
Sbjct: 293 PVTYAIGTEEKNGSKVTTCLFDPNGTGGRLWSDLEAYGHLSSYDHLPSKPKELGI 347


>Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical
           protein T15D6.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 201 RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 109
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 338 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 371


>AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 201 RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 109
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 230 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,422,789
Number of Sequences: 27780
Number of extensions: 189443
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)