Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j12
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-2|CAA94116.1|  529|Caenorhabditis elegans Hypothetical pr...    36   0.034
U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical pr...    34   0.14 
U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical pr...    34   0.14 
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    31   0.73 
AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical...    31   1.3  
Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>Z70205-2|CAA94116.1|  529|Caenorhabditis elegans Hypothetical
           protein C11H1.3 protein.
          Length = 529

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 744 LHCGHSCLCTDCDETVNV-DNTCPKCKSGIRYKLKYKTL*HVALRNGDFRVGLLVAG 577
           L C H C+C++C +++    N CP C+S  R  ++ +   H   RN  +    LV G
Sbjct: 282 LPCRHLCVCSNCADSLRYKHNNCPICRSPFRALIRLRA--HRQTRNQIYETVSLVEG 336


>U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical
           protein F10D7.5c protein.
          Length = 437

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 738 CGHSCLCTDCD-ETVNVDNTCPKCKSGIRYKLK-YKT 634
           CGH C+C +C    +    TCP C++ ++  +K YK+
Sbjct: 401 CGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTYKS 437


>U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical
           protein F10D7.5a protein.
          Length = 617

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 738 CGHSCLCTDCD-ETVNVDNTCPKCKSGIRYKLK-YKT 634
           CGH C+C +C    +    TCP C++ ++  +K YK+
Sbjct: 581 CGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTYKS 617


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 771 FAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 643
           FA   + T L C H   C+DC    N+ + CP C+  I  +++
Sbjct: 568 FAAPGSTTLLPCNHDGFCSDC---CNMMDHCPLCRKPIEERIQ 607


>AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical
           protein Y47D3A.22 protein.
          Length = 765

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 738 CGHSCLCTDCDETVNVDNTCPKCKSGI 658
           CGH   C DC E V +   CP C+  I
Sbjct: 623 CGHRVACVDCTEKVAI-RRCPVCRQFI 648


>Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical
           protein T02C1.1 protein.
          Length = 160

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 771 FAVYPAVTYLHCGHSCLCTDCDET-VNVDNTCPKCKS 664
           F V P +  + CGHS  C  C E+ +N++  CP C++
Sbjct: 14  FFVEPCI--IECGHS-YCRFCIESHLNINEKCPLCRA 47


>Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical
           protein Y26G10.2 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = -2

Query: 404 IINVYNKTEMCIRATFDGRYVVTHDILMCFVNKSYVKQLLRGVDTCITLQQLVKMYSPEF 225
           I+N+Y K++ CIR  F+   ++ +  +  F N  +    +       +++++ K  SP +
Sbjct: 126 ILNMYRKSKTCIRRFFE---LILYIFVFLFPNIMFYGFQIPDQS---SIKEMTKQISPYY 179

Query: 224 GLCVNSKNMFV 192
             C+++ N+ V
Sbjct: 180 PDCIDNPNIIV 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,902,771
Number of Sequences: 27780
Number of extensions: 351076
Number of successful extensions: 989
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)